Pseudomonas aeruginosa NCGM 1900: NCGM1900_2423
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Entry
NCGM1900_2423 CDS
T03789
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
paeb
Pseudomonas aeruginosa NCGM 1900
Brite
KEGG Orthology (KO) [BR:
paeb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paeb03016
]
NCGM1900_2423
Enzymes [BR:
paeb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NCGM1900_2423
Transfer RNA biogenesis [BR:
paeb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NCGM1900_2423
Prokaryotic type
tRNA splicing ligases
NCGM1900_2423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
BAP21525
UniProt:
A0AAQ3LIU5
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All DBs
Position
2507967..2509181
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AA seq
404 aa
AA seq
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MKDMNILEVAGGKPIKLWTQGVPVEEEARQQLLNTAKMPFIFKHLAVMPDVHLGKGSTIG
SVIPTLGAIIPAAVGVDIGCGMIAARTSLVAADLPDNLHGLRSAIEQAVPHGKTFGRRDR
GAWHEVPEAADQAWRALAGRFKAITDKHPRLEKTNNRQHLGTLGTGNHFIEVCLDEADRV
WFMLHSGSRGVGNAIGNLFIELAKADMRQHIANLPDKDLAYFEEGSRYFDDYVEAVGWAQ
DFARQNRALMMHAVIEAARQVIRKPFEANLEAVDCHHNYVQKERHFGQEVLVTRKGAVSA
QKGQLGIIPGSMGAKSFIVRGLGNQEAFCSCSHGAGRTMSRTKAKKVFSVADQARATAHV
ECRKDADVIDEIPMAYKDIDRVMEAQRDLVEVLHTLRQVVCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacatgaatatcctcgaagtggccggcggcaagccgatcaagctctggacccag
ggcgtcccggtggaggaggaagcgcgccagcagttgctgaacacggcgaagatgcccttc
atcttcaagcacctggcggtgatgcctgacgtacacctgggcaagggctcgaccatcggt
agcgtgatccctaccctcggcgcgatcatcccggccgcggtgggcgtggatatcggctgc
ggaatgatcgccgcgcgcacctcgctggtcgccgccgacctgccggacaacctgcacggc
ctgcgcagcgccatcgagcaggcggtaccccacggcaagacctttggccgccgcgaccgc
ggcgcctggcacgaggtaccggaggccgccgaccaggcctggagggcactcgccggtcgc
ttcaaggcgatcaccgacaagcacccgaggctggagaagaccaacaaccgccagcacctg
ggaaccctcggcaccggcaaccacttcatcgaggtctgcctggacgaggccgaccgcgtc
tggttcatgctgcacagcggttcgcgcggggtcggcaacgccatcggcaacctgttcatc
gaactggccaaggcggacatgcgccagcacatcgccaacctgccggacaaggacctggcc
tacttcgaggaaggcagccggtacttcgacgactacgtggaagcggtcggctgggcccag
gatttcgcccggcagaaccgcgcgctgatgatgcacgcggtgatcgaggcggcgcgccag
gtgatccgcaagccgttcgaagccaacctggaggcggtcgattgccaccacaactacgtg
cagaaggagcgccacttcggccaggaggtactggtcacccgcaaaggcgcggtgtccgcg
cagaagggccagctcggcatcattcccggctcgatgggggcgaagagcttcattgtccgc
ggcctcggcaaccaggaagcgttctgctcgtgcagccacggcgccgggcggaccatgagc
cggaccaaggcgaagaaggtcttcagcgtcgccgaccaggcgcgcgccaccgcccacgtc
gaatgccgcaaggacgccgacgtgatcgacgagatcccgatggcctacaaggacatcgac
cgggtcatggaagcccagcgcgatctggtggaagtgctgcacaccctgcgtcaggtggtg
tgcgtgaaaggatga
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