Pseudomonas aeruginosa NCGM 1900: NCGM1900_2636
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Entry
NCGM1900_2636 CDS
T03789
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
paeb
Pseudomonas aeruginosa NCGM 1900
Pathway
paeb03030
DNA replication
paeb03430
Mismatch repair
paeb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paeb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCGM1900_2636 (dnaE)
03430 Mismatch repair
NCGM1900_2636 (dnaE)
03440 Homologous recombination
NCGM1900_2636 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paeb03032
]
NCGM1900_2636 (dnaE)
03400 DNA repair and recombination proteins [BR:
paeb03400
]
NCGM1900_2636 (dnaE)
Enzymes [BR:
paeb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCGM1900_2636 (dnaE)
DNA replication proteins [BR:
paeb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCGM1900_2636 (dnaE)
DNA repair and recombination proteins [BR:
paeb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCGM1900_2636 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
BAP21738
LinkDB
All DBs
Position
2729833..2733390
Genome browser
AA seq
1185 aa
AA seq
DB search
MSFLRYFCSGAFMTVSFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCS
LVKFYKTAMGAGIKPICGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQ
RNGEIIIERDWVKEAAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVE
VQRTSRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPR
RPRTYSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI
DDYLRHASFEGLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF
IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC
MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV
GMTLDKAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSP
IACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNID
FIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGM
VDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADM
LRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLV
SYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVDD
DGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGA
LDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPE
ADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQ
TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEV
SQDDFSGGLRLRAKRVMSLEEARTGLAESLRMKLHADLLKGDRLRWLGELFNRHRGSCPI
TLDYTSADAKALLQFGESWRVDPADDLIQALRDQFGRDNVFLNYR
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtttttgcgttatttctgctccggggccttcatgaccgtatccttcgttcacctg
cgtctgcataccgaattctccctggtcgacggcctggtccgggtcaagcccctggccaag
gcagtggcagggctgggcatgccggcggtggcggtcaccgaccagagcaacatgtgctcg
ctggtgaagttctacaagaccgccatgggcgccggcatcaagccgatctgcggggccgac
atctggctcgccagccgcgaggaagatggcccgctcagccgcctgagcctgctggcgatg
aacgcgaagggctatcgcaacctcaccgagctgatttcccgcggctggagcgaaggccag
cgcaatggcgagatcatcatcgagcgcgactgggtcaaggaggcggcggaaggcctgatc
gcgctgtccgcggccaaggaaggcgagatcggccacgcgctgctcgacggcgaggaggcc
aaggccgaggcgctgttgcgcgagtggatggaggtgttccccgagcgcttctacgtcgaa
gtgcaacgtaccagccgggtcaacgacgaggagcacctccacgcggcggtggctctggcg
tcacgctgcaacgcgccgctggtggcgaccaacgacgtgcgcttcatcaagcaggaagac
ttcgaggcccacgagacccgcgtctgcatcggcgaggggcggaccctcgacgatccgcgg
cggccgcgtacctattcggaccagcaatacctgaagtcgccggcggaaatggccgagctg
ttcagcgacctgccggaagcgttggaaaacaccgtcgagatcgccaagcgctgcaacatc
gaggtgcagctgggcaagtacttcctgccggacttccccacgcccaatggcatgggcatc
gacgactacctgcggcacgcctccttcgaaggtctcgaggagcgcctggaggtgctgttg
ccgaaggacaccccggactacgaggccaagcgccaggtctatgtcgaccgtctgaacttc
gaactcgatatcatcatccagatgggtttccccggttacttcctcatcgtgatggacttc
atcaagtgggcgaagaacaacggcgtgccggtaggccccgggcggggctcgggcgccggc
tcgctggtggcctacgtgctgaagatcaccgacctcgatccgctggcctacgacctgctg
ttcgaacgtttcctcaacccggaacggatctccatgcccgacttcgacgtcgacttctgc
atggagggccgcgaccgggtgatcgactacgtggccgacgcctacgggcgcaacgcggtg
agccagatcatcaccttcggcaccatggcggcgaaggcggtggtacgcgacgtggcgcgg
gtccagggcaagtcctacggtctcgccgaccggctgtcgaagatgattccgttcgaagtc
ggcatgaccctggataaggcctacgagcaggaagaaatgctccgcgacttcctcaagagc
gacgaggaagccgccgagatctgggagatggccctcaagctggaaggcatcactcgcggt
accggcaagcacgccggtggcgtggtgatcgcgccgaccaagctgaccgacttctcgccg
atcgcctgcgacgaggaaggcggcggcctggtgacccagttcgacaaggacgacgtggag
gcggccggcctggtgaagttcgacttcctcggcctgcggaccctgaccatcatcaagtgg
gcgatggagatcatcaaccgcgagcaggccaagaagggcctggagccggtgaacatcgac
ttcatcccgctggacgacaagccgacctattcgctgctgcagaaggccgagaccactgcg
gtgttccagctcgaatcgcgcggcatgaaggagctgatcaagaagctcaagccggactgc
ctggaagacctcatcgcactggtggcgctgttccgcccgggtcctctgcagtcgggcatg
gtggacgacttcatcaaccgcaagcacggtcgcgccgagctgtcctatccgcaccccgat
taccagtacgccggcctggagccggtgctcaagcccacctacggcatcatcctgtaccag
gaacaggtgatgcagatcgcccaggtcatggccggctataccctcggtggcgcggacatg
ctgcgccgggcgatgggcaagaagaagcccgaggaaatggccaagcagcgcggcggtttc
atcgagggttgcaagaacaacggcatcgatgccgacctcgcgggcaacatcttcgacctg
gtggaaaaattcgccggctacggcttcaacaagtcgcactcggcagcctacggcctggtc
tcctaccagaccgcctggctgaagacccacttcccggcgccgttcatggccgcggtactc
accgcggatatgcagaacaccgacaaggtggtgacgctgatcgaagaatgccggcacatg
aagctgcgcatcgtggcgccggacgtgaacaactccgagttccgcttcaccgtcgacgac
gatggccggatcgtctatggcctgggcgcgatcaagggcgtcggcgaggggccggtggag
gcgatcaccgaatgccgcgccgaaggcgggccgttcaacaccctgttcgacttctgcgac
cgcgtcgacctgaaacgcatcaacaagcgcaccctggaagcgctgatccgcgccggtgcg
ctggatcgcctggggccgcactaccacgacgagctaaaggcctaccaggctaccgtcgac
ctcaaccgcgccgtgctgctggcggcgatggaggaagcgatccaggccgccgagcagacc
gcgcgcagccacgacagcgggcacatggacctgttcggcggagtcttcgccgagccggag
gcggatgtctacgccaaccaccgcaaggtcaaggagctgaccctcaaggaacgcctgaag
ggcgagaaggacaccctcggcctgtacctgaccggccatccgatcgacgagtacgaaggc
gaggtgcggcgcttcgcccgccagcgcatcgtcgagctgaagccggcgcgcgatacccag
acggtggccgggctgatcgtcaacctgcgggtgatgaagaacaagaagggcgacaagatg
ggcttcgtcacccttgatgaccgctccggacggatcgaggcctcgctgttctccgaagcc
ttcgccgcggcccagtcgctgctgcagaccgatgcgctggtggtggtcgagggtgaggtc
agccaggacgacttctccggcggattgcgcctgcgcgccaagcgcgtgatgagcctggag
gaggcgcgtaccggcctggcggagagcctgcggatgaagctgcacgccgacctgttgaag
ggcgaccgcctgcgctggctgggcgagctgttcaaccgccatcgcggttcctgcccgatc
accctggactacaccagcgccgacgccaaggccctgctgcagttcggcgagagctggcgg
gtggatccggcggacgatctgatccaggcattgcgtgaccagttcgggcgcgacaacgtc
ttcctcaattatcgttaa
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integrated database retrieval system
