Pseudomonas aeruginosa NCGM 1900: NCGM1900_3330
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Entry
NCGM1900_3330 CDS
T03789
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paeb
Pseudomonas aeruginosa NCGM 1900
Pathway
paeb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paeb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCGM1900_3330 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeb03019
]
NCGM1900_3330 (rne)
03009 Ribosome biogenesis [BR:
paeb03009
]
NCGM1900_3330 (rne)
Enzymes [BR:
paeb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCGM1900_3330 (rne)
Messenger RNA biogenesis [BR:
paeb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCGM1900_3330 (rne)
Ribosome biogenesis [BR:
paeb03009
]
Prokaryotic type
rRNA processing factors
NCGM1900_3330 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAP22420
LinkDB
All DBs
Position
complement(3475425..3478589)
Genome browser
AA seq
1054 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAE
RHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLD
YLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIR
QVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREA
LEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQ
RLRDDSPELVAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVE
PAKPMPEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRD
GRDGNRRDEERKPREERAERQPREERAERPNREERSERRREERAERPAREERQPREGREE
RAERTPREERQPREGREGREERSERRREERAERPAREERQPREGREERAERPAREERQPR
EDRQARDAAALEAEALPNDESLEQDEQDDTDGERPRRRSRGQRRRSNRRERQREVSGELE
GSEATDNAAAPLNTVAAAAAAGIAVASEAVEANVEQAPATTSEAASETTASDETNAPTSE
AVETQGADSEANAGETADIEAPVTVSVVRDEADQSTLLVAQVTEEAPFASESMESREDAE
SAVQPATEAAEEVAAPAPVEVAAPSEPAATEEPTPAIAAVPANATGRALNDPREKRRLQR
EAERLAREAAAAAEAAAQAAPAVEETPAVASEEASAQEEPAAPQAEEIAQADVPSQADEA
QEAVQAEPEASGEDAADTEHAKKTEESETSRPHA
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcgactcaacccgaggagttgcgtgttgcactggtcgacggccaacgc
ctgttcgacctcgacatcgagtcgggcgcccgcgagcagaagaaggccaacatctacaaa
ggccgcatcactcgcgtcgaacccagcctcgaagccgccttcgtcgacttcggcgccgaa
cgccacggcttcctccccctcaaagaaatctcccgcgaatacttcaagaaatcccccgaa
ggccggatcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtccaggtcgag
aaggaagagcgcggcaacaagggcgccgccctgaccaccttcatcagcctggccggccgt
tacctggtgctgatgccgaacaacccgcgcgccggcggcatctcccgccgtatcgaaggc
gaagaacgcaacgagctgcgcgaggccctgaacggcctcaacgcaccggccgacatgggc
ctgatcgtgcgcaccgccggcctcggccgcagcaccgaggaactgcagtgggacctcgac
tacctgctgcaactgtggagcgcgatcaaggaagcgtccggcgaacgtggcgcgcccttc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgaacttcatccgc
caggtgatgccgcagtacgccagcaaggtgaagctgtaccaggacagcgttccgctgttc
aatcgcttccagatcgagagccagatcgagaccgccttccagcgtgaagtgaagctgccg
tccggcggctccatcgtcatcgacccgaccgaggccctggtttccatcgacatcaactcg
gcgcgcgccaccaagggcggcgacatcgaggaaaccgccctgcagaccaacctggaagcg
gccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagagcgtgtccgcgaagcc
ctcgaggccgaccgcgcgcgcgtccaggtcggtcgcatctcgcgcttcggcctgctggaa
atgtcccgccagcgcctgcgtccgtccctcggcgagaccagcggcatcgtctgcccgcgc
tgcaacggccagggcatcatccgcgatgtcgagtcgctgtcgctggccatcctgcgcctg
atcgaggaagaagccctgaaggaccgcaccgcggaagtccgcgcccgcgtgcccttccag
gtcgccgccttcctgctcaacgagaagcgcaacgccatcaccaagatcgaactgcgtacc
cgcgcgcgcatcttcatcctgccggacgatcatctggaaaccccgcatttcgaagtccag
cgtctgcgcgatgacagccccgaactggttgccggccagaccagctacgaaatggccacc
gtcgagcacgaagaagcccagccggtcagctcgacccgcaccctggtccgccaggaagca
gcagtcaagaccgtcgctccccagcagcccgcaccgcaacacaccgaagcaccggtcgag
ccggccaagccgatgcccgagccgagcctgttccagggcctggtgaagtccctggtcggc
ctgttcgcaggcaaggatcaacctgccgccaagcctgctgaaaccagcaagccggctgcc
gagcgccaaacccgccaggacgagcgtcgcaacggccgccagcagaaccgccgccgcgat
ggccgcgatggcaatcgccgcgacgaagagcgcaagccccgcgaggaacgcgcagaacgt
caaccgcgcgaagagcgcgccgaacgcccgaatcgcgaagagcgcagcgaacgccgccgc
gaagagcgcgccgagcgcccggctcgcgaggagcgccagccgcgcgaaggccgtgaagag
cgcgccgagcggacgccccgcgaagaacgccagccgcgcgaaggccgcgaaggtcgcgag
gaacgcagcgaacgccgccgcgaagagcgcgccgaacgcccggctcgcgaagagcgccaa
ccccgcgaaggccgtgaagaacgcgccgagcgcccggcccgcgaagagcgccagccgcgc
gaggatcgccaggctcgcgacgccgcggccctggaagccgaggcgctgccgaacgacgag
agcctggagcaggacgagcaggacgataccgatggcgagcgcccgcgccgccgctcccgc
ggccagcgtcgtcgcagcaaccgccgcgaacgccagcgcgaggtcagcggcgagctggaa
ggcagcgaggcgaccgataacgccgccgcgccgctgaacaccgtcgcagccgccgctgct
gccggtatcgctgtcgccagcgaagccgtagaagcaaacgtggagcaagccccggccact
accagcgaggctgccagcgaaaccacggcaagcgatgaaaccaacgcaccgaccagcgaa
gccgtcgaaacccagggcgcggacagcgaggccaatgccggcgaaaccgccgacatcgaa
gcgccggtgaccgtcagcgtggtccgggacgaagccgaccagagcaccctgctggtcgcg
caagtcactgaagaagctcccttcgccagcgaaagcatggaaagccgcgaagacgccgag
agcgccgtgcaaccggcaacggaagcggccgaagaagttgccgccccggcgcccgtcgag
gtagcagcccctagcgagcccgcagccaccgaggagccgaccccggccatcgcggcggtg
ccggccaacgcgactggccgtgccctcaacgacccacgggaaaaacgtcgcctgcaacgc
gaagccgagcgtctggcacgcgaagccgcagcagcagccgaagcggcagctcaggccgct
cccgccgtcgaggagaccccagctgtagcgagcgaggaagcgtcggcccaggaggaacct
gctgcaccccaggctgaagaaatcgcccaggccgacgttccgtcccaggcggacgaagcc
caggaagcggtacaggccgagcctgaagcttccggcgaagacgccgccgacacagagcac
gcgaaaaagaccgaggaaagcgaaacctcgcgcccgcatgcctga
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