Pseudomonas aeruginosa c7447m: M802_3412
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Entry
M802_3412 CDS
T03098
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
paec
Pseudomonas aeruginosa c7447m
Brite
KEGG Orthology (KO) [BR:
paec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paec03019
]
M802_3412 (hrpA)
Enzymes [BR:
paec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
M802_3412 (hrpA)
Messenger RNA biogenesis [BR:
paec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M802_3412 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
APHB_HrpA
DEAD
AAA_22
AAA_19
nSTAND3
AAA_25
nSTAND_NTPase5
NACHT
ABC_tran
T2SSE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AGV65895
LinkDB
All DBs
Position
complement(3689452..3693432)
Genome browser
AA seq
1326 aa
AA seq
DB search
MTDQTPSLDQLVRRLDQAQISDRHRLRRQLHELRKQPDDARLAQWVERLQTSCAKVEARR
ASVPAIRYDDSLPIAAKRDEIKAAIAAHQVVVIAGETGSGKTTQLPKICLELGRGIHGLI
GHTQPRRLAARSVATRVAEEIGTPLGALVGYQVRFEDQSDDSTLVKLMTDGILLAETQHD
RYLERYDTLIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSRHFDGAP
VIEVSGRTYPVETWYRPLAAETDEEGNRVEDDLSVDQGILAALDEIAAHEREVGKRPGDV
LVFLPGEREIRDAAEMLRKANLRHTEVLPLYARLTPAEQQKIFQPRPGRKIVLSTNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYS
EEDFNARPAFTDPEILRTNLAAVILQMLHLRLGDIEAFPFIEPPDGKAIKDGFTLLQELS
AVNREGQLTPLGRQLARLPIDPRLGRMLLEAAQQGSLEEVLTVASALSVQDPRERPVERQ
QAADQAHAQWKDPDSDFAALINLWRGFEEQRQALGSNALRSWCRKNFLNYLRLREWRDAH
RQLTLICRELKLPFGRPAKAEARKPEAKKGASVDNEREVPGIDYAAVHKAILSGLLSQIG
QKAEEGDYLGARQRRFWIHPSSGIARKRPQWIMAAELVETTKLFARMVAKIEPDWLEPLA
GHLIKTNHFEPHWEKRRGQVVAFEQVTLYGLIVIGRRPVHYGPIDPPVARELFIREGLVR
GEINSRAKCLSANRQLLEKLDELEAKARRRDILADEETLFAYYDARLPADIYQTASFEKW
YARERQNQPDLLLMREEDVLAREASEVTAAQYPDRLRLGDLHLSLSYQFEPGTARDGVTV
RVPAPLLPQLPAERIDWLVPGLLYDKAVALVRNLPKAIRKSFVPVPDFVRAALERITFGE
GSLPQALGRELQRMTGVRVADEAWAEAATQLDDHLRMNIEVVDAQGKFLGEGRDLAELTA
RFAEASQAALAIPQADKEQQRPVEAKAFASVAEKAQQKVAGLSMTVYPALVEEQGEVKEG
RFPTQAEADYQHRRALQRLLLQQLAEPAKYLRAKLPGQTEMGLLYRELGRVEALVEDILL
ASLDSCVLQGESLPRDGAALAALAERKRAAWNEHAERLARLVLDILKLWHGLQKRFKGKV
ELAMTVPLNDVKGQLANLVYPGFVRATPLEWLKEYPRYLKAIEQRLDKVAGQVQRDRVWS
GELGELWAQYQARLAKHAQEGKRDAELQVYRWMLEEYRVSLFAQQLGTRLPVSDKRLAKQ
WSQVEG
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccagactccttcccttgaccaactcgtccggcgcctcgaccaggcccagatc
agcgaccgccaccgcttgcgccggcagctccacgaactgcgcaagcagcccgacgacgcg
cgcctggcgcagtgggtcgagcgcctccagacctcctgcgccaaggtcgaggcgcggcgc
gccagcgtgccggcgatccgctacgacgacagcctgccgatcgccgccaagcgcgacgag
atcaaggccgctatcgccgcccaccaggtggtggtgatcgccggcgagaccggctcgggc
aagaccacccagttgccgaagatctgtctggagctgggtcgcggcatccacggcctgatc
ggccatacccagccgcgtcggctggcggcgcgcagcgtggcgacgcgggtcgcggaagag
atcggtacgccgctgggcgcgctggtcggctaccaggtgcgcttcgaggaccagagcgac
gacagcaccctggtcaagctgatgaccgacggcatcctcctggccgagacccagcatgac
cgctacctggagcgctacgacacgctgatcgtcgacgaagcccacgagcgcagcctgaac
atcgacttcctcctcggctacctgaagaccctgttgcaccggcgtccggacctgaagctg
atcatcacctcggcgaccatcgacctggagcgtttctcccggcatttcgacggcgccccg
gtgatcgaggtttccggccgcacctatccggtggagacctggtaccggccgctggcggcg
gaaaccgacgaggagggcaaccgggtcgaggacgacctgtcggtggaccagggcatcctc
gccgccctcgacgagatcgccgcccacgaacgcgaggtcggcaagcggcccggcgacgtg
ctggtgttcctccccggcgagcgggagatccgcgacgccgcggagatgctgcgcaaggcc
aacctgcgccacaccgaggtgctgccgctgtacgcgcgactgaccccggccgagcagcag
aagatcttccagccgcgcccgggacgcaagatcgtgctgtccaccaacgtcgcggaaacc
tcgctgacggtgccgggcatccgttacgtgatcgacagcggcaccgcgcggatcagccgc
tacagctaccgcgccaaggtccagcggctgcccatcgaggcggtgtcgcaggccagcgcc
aaccagcgcaagggccgttgcggacgggtcgagccgggcatatgcgtgcgtctctacagc
gaggaggacttcaacgcgcgtccggccttcaccgacccggaaatcctccgcaccaacctg
gccgcggtgatcctgcagatgctgcacctgcgcctcggcgacatcgaggcgttccccttc
atcgagccgccggacggcaaggcgatcaaggacggcttcacccttctgcaggaactgtcg
gcggtcaaccgcgaaggccagctgaccccgctggggcgccaactggcgcgcctgccgatc
gacccgaggctgggccgcatgctgctggaggcggcccagcagggtagcctggaggaagtg
ttgacggtggccagcgcgctgtccgtgcaggacccgcgcgagcgtccggtggagcggcag
caggccgccgaccaggcgcacgcgcaatggaaggacccggattccgacttcgccgcgctg
atcaatctctggcgtggcttcgaggagcagcgccaggcgctgggttccaatgccctgcgc
agctggtgccggaagaacttcctcaactacctgcgcctgcgtgagtggcgcgacgcccac
cgccaactgaccctgatctgccgcgaactgaagctgccgttcgggcgtccggccaaggcc
gaggcgcgcaagccggaggcgaagaaaggcgcgtcggtcgacaacgaacgcgaggtaccg
gggatcgattacgcggcggtccacaaagcgatcctgtccggcctgctcagccagatcggg
cagaaggccgaggaaggcgactacctcggcgctcgccagcgacgtttctggatccatccg
tccagcggcatcgctcgcaagcgcccgcaatggatcatggccgcggaactggtggagacc
accaagctgttcgcccgaatggtcgcgaagatcgagccggactggctggagccgctggct
gggcacctgatcaagaccaaccacttcgagccgcactgggagaagcgtcgcggccaggtg
gtggcgttcgagcaggtcaccctctacggcctcatcgtcatcggtcgacgtccggtgcac
tacggtccgatcgacccgccggtggcgcgcgagctgttcatccgcgaaggcctggtgcgc
ggtgagatcaacagccgcgccaagtgcctgagcgccaaccggcagttgctggaaaagctc
gacgagctggaagccaaggcacgccggcgcgacatcctggctgacgaggaaaccctgttc
gcctattacgacgcgcgcctgccggcggatatctaccagaccgccagtttcgagaaatgg
tacgcccgcgagcggcagaatcagccggacctgctgctgatgcgtgaggaagacgtgctg
gcccgcgaagccagcgaagtcactgcggcgcagtacccggatcgcctgcgcctgggcgac
ctgcacctgtcgctgagctaccagttcgagcccggcaccgcgcgcgacggcgtcaccgtg
cgggtaccggcgccgctgctgccgcaattgccggccgaacgcatcgactggctggtgccc
ggcctgctctacgacaaggcggtggcgctggtgcgcaacctgccgaaggcgatccgcaag
agcttcgtgccggtaccggacttcgtccgcgccgccctggagcgcatcaccttcggcgaa
ggttcgctgccgcaggcgctgggccgcgagcttcagcgcatgaccggcgtgcgggtagcc
gacgaggcctgggccgaggcggcgacgcagttggacgatcacctgcggatgaacatcgag
gtggtcgacgcccagggcaagttcctcggcgagggccgcgacctggccgaactcaccgcg
cgtttcgccgaagccagccaggcggcgctggcgataccccaggccgacaaggaacagcag
cgtccggtggaggccaaggccttcgccagcgtcgccgagaaggcccagcagaaggtcgcc
ggattgtcgatgacggtatacccggcgctggtggaggagcagggcgaggtcaaggaaggg
cgcttcccgacccaggccgaggccgactaccaacaccgccgcgccctgcaacgactgctg
ttgcagcaactggccgagccggccaagtacctgcgcgccaagctgccggggcagaccgag
atgggcctgctgtaccgcgagctgggacgggtcgaggcgctggtcgaggacatcctcctg
gccagtctcgacagttgcgtgctgcagggcgaaagcctgccgcgcgacggcgccgccctg
gccgcgctggccgagcgcaagcgcgctgcctggaacgagcacgccgagcgcctggcacgc
ctggtgctggatatcctcaagctctggcacggcctgcagaagcgcttcaagggcaaggtc
gagctggccatgaccgtgccgctgaacgacgtcaagggccaactggccaacctggtgtat
ccggggttcgtccgcgccaccccgctggagtggttgaaggagtatccgcgttacctcaag
gccatcgagcagcgcctggacaaggtcgccggccaggtccagcgcgaccgggtgtggagc
ggcgagctgggcgaactctgggcgcaataccaggcgcgcctcgccaagcacgcccaggaa
ggcaagcgcgacgccgagttgcaggtgtatcgctggatgctggaggagtaccgggtctcg
ctgttcgcccagcaactgggaacccggctgccggtctcggacaagcgcctggccaagcag
tggagccaggtcgagggctag
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integrated database retrieval system
