Pseudomonas aeruginosa c7447m: M802_4400
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Entry
M802_4400 CDS
T03098
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
paec
Pseudomonas aeruginosa c7447m
Pathway
paec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M802_4400 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paec03021
]
M802_4400 (rpoB)
03400 DNA repair and recombination proteins [BR:
paec03400
]
M802_4400 (rpoB)
Enzymes [BR:
paec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M802_4400 (rpoB)
Transcription machinery [BR:
paec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M802_4400 (rpoB)
DNA repair and recombination proteins [BR:
paec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M802_4400 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AGV66717
LinkDB
All DBs
Position
complement(4774346..4778419)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKEQFRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDRESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEILNAFYATNVFHIKGET
LNLELVPQRLRGEVASIDIKDGSGKVIVEQGRRITARHINQLEKAGVSQLEVPFDYLIGR
TIAKAIVHPATGEIIAECNTELTLDLLAKVAKAQVVRIETLYTNDIDCGPFISDTLKIDN
TSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GPGVLSKEDIIDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVK
DSLVTDEIVFLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRVVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
VVARGDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDQ
IRKDLNEEFRIVEGATFERLRAALVGAKAEGGPALKKGTEITDDYLDGLERGQWFKLRMA
DDALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVAELRKFLHEIYNEIGGREENLDELGDNEILALAKNLRGGVPMATP
VFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtatttgctggccatccagctggattcctatcgcgaattcctgcag
gctggcgcaaccaaggagcagttccgcgatatcggtctgcacgcggccttcaagtccgtt
ttcccgattatcagctattccggcaatgctgccctggaatacgtcggctaccgtctgggt
gagccggcattcgatgtcaaggagtgcgtgctgcgcggcgtgaccttcgccgtaccgctg
cgcgtgaaagttcgcctgatcatcttcgaccgcgaatcgtcgaacaaggcgatcaaggac
atcaaggaacaagaagtctacatgggggaaatccccctgatgaccgagaacggtaccttc
atcatcaacggtaccgagcgtgtcatcgtctcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgtggcaagacccacagctccggcaagctgctgtactccgcgcggatc
attccttaccgcggttcctggctggacttcgagttcgatccgaaggactgcgtgttcgtc
cgtatcgaccgtcgccgcaagctgccggcctcggtactgctgcgcgcgctcggctacagc
acggaagagatcctcaacgccttctacgcgaccaacgtcttccacatcaagggcgagacc
ctgaacctggaactggtcccgcagcgcctgcgcggtgaagtcgcgagcatcgacatcaag
gatggcagcggcaaggtgatcgtggagcaggggcgtcgtatcactgcccgccacatcaac
cagctggaaaaggctggcgtgagccagctggaagtgccgttcgactacctgatcggccgt
accatcgccaaggcgatcgtgcatccggctaccggcgagatcatcgccgagtgcaacacc
gagctgaccctcgacctcctggccaaggtggccaaggcccaggtcgtgcgcatcgagacc
ctgtacaccaacgacatcgactgcggtccgttcatctccgacaccctgaagatcgacaac
accagcaaccagctggaagccctggtcgagatctaccggatgatgcgtccgggcgagccg
ccgaccaaggaagctgccgagaccctgttcggcaatctgttcttcagcgccgagcgttac
gacctgtcggccgtaggccggatgaagttcaaccgccgtatcggtcgtaccgagatcgaa
ggtccgggcgtcctgagcaaggaagacatcatcgatgtgctcaagaccctcgtcgacatc
cgtaacggcaagggcatcgtcgatgacatcgaccacctgggcaaccgtcgcgtccgttgc
gtcggcgaaatggccgagaaccagttccgcgtgggcctggtgcgtgtcgagcgcgcggtc
aaggaacgcctgtccatggccgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggtggctgccgcgatcaaggagttcttcggttcgagccagctgtcgcagttcatg
gaccagaacaacccgctttccgagatcacccacaagcgccgcgtctccgcgctcggcccg
ggcggtctgacccgtgagcgtgcgggcttcgaggttcgtgacgtacacccgacccactac
ggccgcgtgtgcccgatcgaaacccctgaaggtccgaacatcggtctgatcaactccctg
gcgacctacgcccgcaccaacaagtacggcttcctcgagagcccgtaccgcgtggtcaag
gacagcctggtaaccgacgagatcgtgttcctgtcggcgatcgaagaagccgaccacgtc
atcgcccaggcttcggcgaccctcaacgagaagggtcaactggtggacgagctggtggcc
gtgcgtcacctgaacgaattcaccgtgaaggcgccggaagacgtgaccctgatggatgtt
tcgccgaagcaggtcgtttccgtcgctgcctcgctgattccgttcctcgagcacgacgac
gccaaccgcgcactcatgggctcgaacatgcagcgtcaggccgtgccgaccctgcgtgcc
gacaagccgctggtgggtaccggcatggagcgcaacgtggcgcgcgactccggcgtctgc
gtcgtggctcgccgtggcggtgtgatcgactcggtcgatgccagccgtgtcgtggttcgc
gtggcggatgacgaagtcgagaccggcgaagcgggtgtcgacatctacaacctgaccaag
tacacccgttccaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgac
gtggtcgcgcgcggcgacatcctggccgacggtccgtccaccgacatgggcgaactggcc
ctgggccagaacatgcgcgtagcgttcatgccctggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgcgtggtccaggaagatcgtttcaccacgatccacatccaggaa
ctgacctgcgtcgctcgtgacaccaagctcggcccagaggaaatcaccgcggacatcccg
aacgtgggcgaggccgcgctgaacaagctggacgaagccggtatcgtctacgtcggcgcc
gaagtgcaggccggcgacatcctggtcggcaaggtcactccgaaaggcgagacccagttg
actccggaagagaagctgctgcgcgcgatcttcggtgagaaggcgtccgacgtgaaggac
acctccctgcgtgtgccgaccggcaccaagggtaccgtcatcgacgttcaggtcttcacc
cgcgacggcgtcgagcgcgattcccgcgcgctgtccatcgagaagatgcaactcgaccag
atccgcaaggacctgaacgaagagttccgcatcgtcgaaggcgcgaccttcgagcgtctg
cgtgccgccctggtcggtgccaaggctgaaggtggcccggcgctgaagaagggcacggag
atcaccgacgactacctcgacggtctcgagcgcggccagtggttcaagctgcgcatggcc
gacgacgccctgaacgaacagctggagaaggcccaggcctacatcagcgatcgtcgccag
ctcctggacgacaagttcgaggacaagaagcgcaagctgcagcagggcgacgacctggct
ccgggcgtgctgaagatcgtcaaggtctacctggcgatcaagcgtcgcatccagccgggc
gacaagatggccggccgtcacggtaacaagggtgtggtctcggtgatcatgccggtggaa
gacatgccgcacgatgccaacggcaccccggtcgacatcgtcctcaacccgctgggcgta
ccgtcgcgtatgaacgtcggtcagatcctcgaaacccacctgggcctcgcggccaagggg
ctgggcgagaagatcaaccgcatgctcgaagagcagcgcaaggtcgccgaactgcgtaag
ttcctgcacgagatctacaacgagatcggcggtcgcgaggaaaacctcgacgagctgggc
gacaacgagatcctcgcgctggccaagaacctgcgcggtggcgtaccgatggcgaccccg
gtgttcgatggcgccaaggaacgcgagatcaaggccatgctgaagctggccgacctgccg
gaaagcggccagatgcgtctgttcgacggccgtaccggcaaccagttcgagcgtccgacc
accgtcggctacatgtacatgctcaagctgaaccacctggtggacgacaagatgcacgcc
cgttccaccggctcgtacagcctggttacccagcagccgctgggtggtaaggcacagttc
ggtggtcagcgcttcggtgagatggaggtgtgggcgctggaagcctatggcgcggcgtac
accctgcaggaaatgctgacggtcaagtcggacgacgtgaacggccggaccaagatgtac
aagaacatcgtggacggcgatcaccgcatggaggccggcatgcccgagtccttcaacgtt
ctgatcaaagagatccgttcgctcggcatcgacatcgaactggaaaccgaataa
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integrated database retrieval system
