Pseudohalocynthiibacter aestuariivivens: G5B38_01125
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Entry
G5B38_01125 CDS
T06463
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paed
Pseudohalocynthiibacter aestuariivivens
Pathway
paed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G5B38_01125 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paed03400
]
G5B38_01125 (mfd)
Enzymes [BR:
paed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G5B38_01125 (mfd)
DNA repair and recombination proteins [BR:
paed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G5B38_01125 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
AAA_16
AAA_30
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QIE44243
LinkDB
All DBs
Position
223950..227417
Genome browser
AA seq
1155 aa
AA seq
DB search
MASSPHITVSGAPEGFDARLLLDEVARSGGSVLHVARDDKRLAAMAAALRFFAPDMPVIA
FPGWDCLPFDRVSPNADISAARMATLAALVHGMPGQYVLLTTLNAATQRVPAREVLKDAV
FRAQVNYRVDEAALRDFLVRMGFVQSPTVTEPGDYAIRGGIIDIYPPGTGGPVRLDLFGD
VLDGIRRFDPATQRTTEKLSQIELAPVSEVILDEAAITRFRQNYRIEFGSAGTDDPLYEA
VSAGRKHQGVEHWLPFFHARLETIFDYLPEATVTLDDQVTPSRIARWDSIADQYETRREA
LKNKARGDSVYKPVAPGLLYLDDAAWQAAVASRRVLQLSALPQATGAGVTDAGGRLGRNF
APERQQESLSLFGALKTHINAKLGQGPILLACYSEGARERLEGLLEDEGLVGAVTVKDAG
RLGKRGLHLAVWALEHGFEGPYESGRLTVIAEQDILGDRLIRAPKRRRRADNFLTEAQSL
SPGDLVVHVDHGVGRYHGLEVISALGAAHECLALEYAEGARLYLPVENIELLSRFGHEEG
LLDKLGGGAWQAKKARLKERIKEMADRLIRIAAERALRRAPVMEPEHHAWEAFSARFPYA
ETDDQLRAIEDVIADLGAGTPMDRLICGDVGFGKTEVAMRAAFVAAMSGMQVAVIAPTTL
LARQHYQGFAERFRGFPISVRPLSRFVGAKEAAATREALSRGTVDIVVGTHALLAKSIRF
KNLGLLVIDEEQRFGVAHKERLKALRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPP
VDRLSIRTYVSEFDGVTIREALLREHYRGGQSFYVVPRISDLPEIEDFLTAQLPELSYVV
AHGQMAAGELDSRMNAFYDGKYDVLLATTIVESGLDIPTANTMVIHRADMFGLSQLYQIR
GRVGRSKTRAYAYLTTKPRMKLTPAAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLG
EEQSGQMRDVGYELYQSMLEEAIAKIKAGEMEGLSEADSQWAPQINLGVPVLIPEEYVPD
LDVRLGLYRRLSSLQTKVELEGFAAELIDRFGKLPREVNTLMLVVRIKAMCKRAGIAKLD
GGPKGATIQFHNDKFASPQGLVEFIEAQKGLAKVRDNKIVVRRDWRKDSDKIKGAFAIAR
DLAEKVAAARKPTRK
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggcatccagcccccatatcaccgttagcggagcgcccgagggtttcgatgcgcggctg
ttgctggacgaagtggcgcggtctggcgggtcggtgctgcatgtggcccgcgacgacaag
cggctcgcggcgatggcggccgcactacggttctttgcgccggacatgccggtgattgcc
tttcccggttgggattgtctgccgttcgatcgtgtgtcgcccaatgccgacatcagtgcc
gcgcgtatggcgacgttggccgcgctggtacatggcatgcccgggcaatacgtgctgttg
acgacgctaaacgcggcgacacagcgggtgccggcgcgcgaagtcctgaaagatgcggtt
ttcagagcgcaggtgaattaccgtgtggacgaggccgcgctgcgggattttctggtgcgg
atggggttcgtgcagtcgcctacggtgaccgaaccgggcgattatgcgattcggggcggg
ataattgatatctatccgccgggcacgggcggtcctgtgcggctcgatctgtttggcgac
gttctggacgggatccgccggtttgacccggcaacgcagcggaccacagaaaagctgagt
cagatcgaactggccccggtgtccgaagtgatcctcgatgaggcggccatcacacgtttt
cgccagaactaccgcatcgaattcggctctgcggggaccgatgatccgctctatgaggcg
gtcagtgcggggcggaaacatcagggtgtcgagcattggctgccattctttcatgcgcga
ctggaaaccatattcgattatctgccagaggcgacggtcacgcttgacgatcaggtgacg
cccagccgcattgcccgctgggacagtatcgccgaccaatacgagacccgccgcgaggcg
ctgaagaacaaggcgcgtggtgacagcgtctacaagcctgtggcgcccggcttgctatat
cttgatgacgctgcatggcaggcagcggtggcgtcgcgtcgtgtactgcagttgtcggca
ctgccacaggccaccggagcaggtgttacggatgcgggcgggcgtttgggtcgcaatttc
gcgccagagagacaacaggaaagcttgagccttttcggggcgttgaagacgcacattaat
gcaaaactggggcagggcccgatcctgctggcgtgctactcggaaggcgcgcgagagcgg
cttgaggggctgttggaggacgaaggtctggtcggggccgtcactgtcaaggacgcgggg
cggctgggcaagcgcggattgcatttggctgtctgggcgctggagcatggctttgagggg
ccatatgagagcggtcggctgacggtcatcgccgaacaggacattctgggtgatcgcctg
atccgcgcccctaaacggcgacgccgcgccgacaacttcctgactgaggcgcaaagcctg
agccccggcgatctggtcgtgcatgtcgatcacggtgtcgggcgttatcacgggttggaa
gtgatctcggcgctgggggcggcgcatgaatgtcttgcgttggagtacgccgagggcgcg
cggctttacctaccggtggaaaacatcgaactgctcagccgattcggccacgaagagggc
ctgctggacaagctcggcggtggcgcgtggcaggccaagaaagcccggctcaaagagcgc
atcaaggagatggccgaccggctgatccgcattgccgcagagcgcgcgctgcgccgcgcc
ccggtgatggagcccgagcatcacgcgtgggaggcgttttcggcccgttttccctatgcc
gaaacggatgaccaactgcgcgccatcgaggatgtcattgccgatctgggggcaggcacg
ccgatggatcgcctgatttgcggcgatgtcggatttggcaagaccgaagtggcgatgcgt
gccgcgttcgtcgcggcgatgtcggggatgcaggtcgcggtgatcgcgcccaccacgttg
ctggcacggcaacactatcagggcttcgccgagcggtttcgcggcttccccatctcggtg
cgcccgctgtcacgctttgtcggggccaaagaggcggcagccacccgcgaggcgctgtcg
cgcggcaccgttgatatcgtcgtcggtacccacgcgctcttggccaagagcattcggttc
aagaacctcggcctgctggtcatcgacgaagagcaacgttttggcgtggcgcacaaggag
cgcctcaaggcgctgcgatcagatgtgcatgttctgacgctgaccgcgacgccgatcccg
cgtacgctgcaactgagcctatcaggcgtgcgggaccttagcattatcggcacaccgcct
gtcgaccgcctgtcgatccgcacctatgtcagcgagtttgacggcgtcaccatccgcgag
gcgctgttgcgcgagcattatcgcggcgggcagagcttttacgtggtgccgcgtatctcg
gatctgccggaaatcgaggatttcctgaccgcacagctacccgaactcagctatgtcgtg
gcccatggccagatggcggcaggcgaactcgacagccggatgaacgcgttttacgacggt
aaatacgatgttctgctggccacaaccattgtcgaatcgggactggatattccgaccgcg
aacacgatggtcatccaccgcgcggacatgttcgggctcagccaactctatcagatccgg
ggccgggtcggacgctcaaaaacgcgcgcttatgcctatctcaccaccaagccacggatg
aaactgacacctgccgccgaaaagcgcctgcgcgtgctgggtagcctcgacacgctcggt
gcaggtttcacgctggccagccaagatctcgatattcgcggtgcaggcaatctgctgggc
gaagagcagtcaggccagatgcgcgatgtggggtacgaattgtaccaatccatgctcgaa
gaggcgattgccaagatcaaagccggcgaaatggaaggcctcagtgaggccgacagccaa
tgggcaccacagatcaaccttggtgtacccgtgctgatccccgaggagtatgtgcccgat
ctggatgtgcgcctcggtctttaccgccgcctcagcagccttcagaccaaggttgagctg
gaaggattcgcggcagaactgattgaccgttttggcaagctgccgcgtgaagtgaatacg
ttgatgctggtcgtgcggatcaaggcgatgtgcaaacgtgcagggattgccaaacttgac
ggcggacccaagggcgccacgatccagttccacaacgacaaatttgcatcgcctcagggg
ctggtcgaattcatcgaggcgcaaaaagggctggcgaaagtgcgcgacaacaagatcgtc
gtgcgccgcgactggcgcaaggatagcgacaagatcaaaggcgcctttgccattgcccgc
gatttggcagagaaggtcgcggctgcgcgcaaaccaacccgtaaataa
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