Pseudohalocynthiibacter aestuariivivens: G5B38_03420
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Entry
G5B38_03420 CDS
T06463
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paed
Pseudohalocynthiibacter aestuariivivens
Pathway
paed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5B38_03420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paed03019
]
G5B38_03420
Enzymes [BR:
paed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5B38_03420
Messenger RNA biogenesis [BR:
paed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5B38_03420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
ERCC3_RAD25_C
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
QIE47411
LinkDB
All DBs
Position
complement(709266..710591)
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AA seq
441 aa
AA seq
DB search
MGLPGSLVKKLAAQGITDPTPIQSHAIPHALNGFDVMGLAQTGTGKTAAFGLPLIARMME
ERTKPGPKAVASLILAPTRELAGQIKDTLLPLVRDTPMKIGVVVGGQSINVQIKRLEKGT
HILVATPGRLLDLLDRRAVRLDETKFLVLDEADQMLDLGFIHALRKIAGLIPSERQTMLF
SATMPKQMEEIAGSYLKHPKRVQVAPPGKAADKVTQEVHFIAKAEKPNLLIELLGKHRDE
LALVFGRTKHGSDKLAKKLMSAGFDVAAIHGNKSQGQRDRALKAFRDGEVKVLVATDVAA
RGLDIPDVKHVYNFDLPNVPDNYVHRIGRTARAGKDGAAIAFCSPDEMGELKDIQKTMGI
SIPVASGRAWEDLPDPKAKPKGRGGSGGPGGRRRGGGGGGPKGGGQGGRNAQGAAGGGAA
GQGKPQQRRRRRGGGGPKAAA
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggggctgcccggcagtctggtcaaaaaacttgccgcgcaaggcatcaccgaccccact
ccgatccagagccatgcgattccgcatgccttgaacggatttgacgtgatggggctggcg
cagaccggcacgggcaaaaccgccgcgtttggtctgccgctgatcgcgcggatgatggag
gaacggacgaagccggggcccaaagcggttgccagcctgattctggccccgacacgcgaa
ttggctggccagatcaaggatacgctattgccgctggtccgtgacacgccgatgaaaatc
ggtgtcgttgtcggcggacaatcgatcaatgtgcagatcaagcggctggagaagggcacg
catattctcgtggcgacgccgggccggttgctggacctgctggatcgtcgcgccgtgcgg
ctggacgagaccaagtttctggtgctggacgaggccgatcagatgctggatctcgggttc
atccacgccctgcgcaagattgcgggtctgatcccgtcggaacgccagacgatgctgttt
tcggccacaatgcccaagcagatggaagaaattgcgggaagttatctgaagcatcccaaa
cgggtacaagttgcccctccgggcaaggctgcggataaggtcacgcaagaagtccatttt
atcgccaaggcggaaaagccgaacctgctgatcgagttgctgggcaagcaccgggatgaa
ttggcgctggttttcggccggaccaagcatggatcggacaagctggcgaaaaagctgatg
tcagccgggttcgatgttgccgccattcatggcaacaaaagtcagggccaacgtgatcgc
gcgttaaaggcgttccgtgacggtgaggtaaaggtactggtggccaccgatgtggcggcg
cgcggcctcgatatcccggatgtgaaacatgtctacaactttgacctgccgaacgtgccg
gacaactacgttcaccgtattggtcggaccgcgcgggccggcaaggatggggcggcgatc
gcgttctgttcacctgacgaaatgggcgaactgaaggacattcaaaaaacgatgggtata
tcgatccctgtcgcgtcggggcgcgcatgggaagatttgcctgatcccaaagccaagcca
aaagggcgcggtggctctggtggtcccggtggtcgacgtcgtggcggcggtggcggcggc
cccaaagggggcggacagggtggtcgcaatgcgcagggcgcagcaggtggaggcgctgcc
gggcagggcaagccgcaacagcggcgtcgccgtcgcggtggtggcggtcccaaggctgct
gcctga
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