Pseudohalocynthiibacter aestuariivivens: G5B38_03555
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Entry
G5B38_03555 CDS
T06463
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paed
Pseudohalocynthiibacter aestuariivivens
Pathway
paed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5B38_03555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paed03019
]
G5B38_03555
03009 Ribosome biogenesis [BR:
paed03009
]
G5B38_03555
Enzymes [BR:
paed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G5B38_03555
Messenger RNA biogenesis [BR:
paed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G5B38_03555
Ribosome biogenesis [BR:
paed03009
]
Prokaryotic type
rRNA processing factors
G5B38_03555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QIE44675
LinkDB
All DBs
Position
complement(742230..744944)
Genome browser
AA seq
904 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMKSDDEDNKPKRRSRGGRGRS
KTDSKAEKTQSDDAVQTAEVAEDAISGMETIDLGDSEEGSSPMERVAETPVEEPEADAAT
AETPDATGGDDHADANQDGVEDDAEGDADSDGDGDKDSKTRASRKDSSIEVVADEDDQDD
IRPPRKPRPKRYKIQEVIKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARG
GGISRKITNAPDRKKLKEIANEIDVPQGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQIR
ELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVLVEGERGYRIAKDFMKMIMPSHAKNV
RHYADTMPLFARFQVESYLNSMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIE
DTATKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQV
SRISGFGLMEMSRQRLRPGMIEATTQPCPSCHGTGLIRSDDNLALSILRQIEEEGVRRRS
REVLVRAPVGIANFLMNQKREHVAQIEARYGLSVRIEGDPSLISPDFTLEKFKTATRAVP
EVTAPVVSVDSSLMADIDESGTQDADPDEAPRADTDTEGGDDKPKKRRRRRRSRSRGGKN
RNDDENGGDNENGNDGNDDAINADAAPDTKPDSDEKKTAQSDAKESADPAGEEVEKPKPK
RTRKPRAKKADVEAEATADAAATGDNAAADTPEEAPKPKRTRKPRAKKSDIAADAAATEE
ATPEPAPVAEPTPAAEPVAQQAIEPVVEQEAETAVMKEPVAPPAPEPEPQEDKPKRKGWW
SLGR
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaaaatgcttattgacgccacccacgcggaagagacccgcgttgtggtggtt
gacggaaacaaggtcgaggaattcgatttcgaatccgagaataaacgccagcttgctggc
aatatctacctcgccaaggtaacgcgggtcgaaccgtcgcttcaggcggcgtttgtcgac
tatggcggaaatcgtcacgggttcctcgcgttctctgaaattcaccccgattattaccaa
atccccgtcgccgaccgcgaggcgctgatggaggaagaacgcgcctatgccgaggcgatg
aagtctgacgacgaagacaacaaacccaagcgccggtcgcgcggtgggcgagggcgttcc
aaaactgactccaaagcggagaaaacccagagcgacgacgcggtgcagaccgccgaagtg
gccgaggacgcgatttctgggatggagacgattgaccttggcgatagcgaagagggcagc
tcgccgatggagcgggttgccgagacgccggtcgaagagcctgaagcagacgcggcaact
gccgaaacgcctgatgcgaccggtggcgatgatcatgccgacgcaaaccaagacggcgtc
gaggatgacgccgaaggtgatgctgacagtgacggtgacggtgacaaagacagcaaaacc
cgcgcgtcgcgcaaggattccagcatcgaggttgtcgccgacgaagacgatcaagacgac
atccgcccgccgcgcaagccgcgtcccaaacgctataagattcaagaagtcatcaaggtg
cgccagatcctgctggtgcaggtcgtcaaggaagagcgcggaaacaaaggcgctgccctg
accacgtatctgtcgctggccggtcgttactgtgtgttgatgcctaacacggcgcgcggg
ggtggtatcagccgcaagattacgaacgcgccggaccgtaagaagctgaaagagatcgcc
aacgagatcgacgtgccacagggcgcgggtctgatcgtgcgcacggcgggtgccaagcgg
accaaatccgaaatcaaacgcgactatgagtatctgcaacgtctgtgggagcaaatccgc
gaactgacgctgaaatctatcgcgccggccaagatctatgaagagggcgacctgatcaaa
cgctcgattcgcgatctctataatcgcgagattgacgaggttctggtcgaaggcgaacgc
ggctaccgcatcgccaaagactttatgaagatgatcatgccgtcccacgccaagaacgtg
cgccattacgcggatacgatgccgctctttgcgcgctttcaggtggaatcctatctgaat
tcgatgttcaacccgacggttcagctaaaatcgggtggttacatcgtgatcggcgtgacc
gaggcgctggtcgccatcgacgtcaactctggtcgggccaccaaggaaggctcgatcgag
gataccgcgaccaagaccaaccttgaggccgccgaagaggtggcgcgtcagttgcgtctg
cgcgatctggcgggtctgattgtcatcgactttatcgacatggatgagcgcaagaacaac
gccgcggtcgaaaagcggatgaaagacaagctgaagaccgaccgggcgcgtattcaggtc
agccgcatttcgggctttggcttgatggagatgagccgccagcgtctgcgccccggcatg
atcgaggcgacgacgcagccgtgcccatcgtgccacggcaccggattgatccggtcagac
gacaatctggcgctgagtattttgcgtcagatcgaggaagaaggcgtacgtcgccgctcg
cgcgaagtgctggtgcgtgcaccggtggggatcgcaaacttcctgatgaaccaaaagcgc
gaacatgtagcgcaaatcgaggcgcgctatggtctttcggtgcggatcgagggcgatccg
agcctgatcagccctgatttcacgttggagaagttcaagaccgccacccgcgccgtgccc
gaagtcactgcaccggtggtatcggtggacagttctttgatggccgatattgatgagagc
ggaacgcaggacgccgatccggacgaggcgccaagggccgacaccgatacggagggcggc
gacgacaagccgaaaaagcgccgtcgtcggcgtcgcagccgtagccgcggtggcaagaat
cgcaacgatgacgagaatggtggcgataacgagaatggcaacgacggcaatgatgacgca
atcaacgccgatgccgcgccagataccaagccggattctgatgagaagaagactgcgcaa
tccgacgccaaagaatcggcggatcctgctggcgaagaggtcgagaagcccaaaccgaag
cgcacgcgtaaaccgcgcgccaagaaggctgatgtagaggcagaggcgacggctgacgcg
gccgcaacgggtgacaatgctgctgccgatacgccggaagaagcgcccaaaccaaagcgc
acccgcaaaccgcgtgccaagaagtcagacatcgccgccgatgctgcggctactgaagag
gctacgcctgaacctgcgccggtggcagagcccacaccggcagcggaacctgtggcgcag
caggctattgagccggttgttgaacaagaggccgaaaccgccgtgatgaaagagcctgtg
gcacctcctgcaccagagcctgaaccgcaggaagacaaacccaagcgcaagggatggtgg
tcactgggccgctga
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