Pseudohalocynthiibacter aestuariivivens: G5B38_03640
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Entry
G5B38_03640 CDS
T06463
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
paed
Pseudohalocynthiibacter aestuariivivens
Brite
KEGG Orthology (KO) [BR:
paed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paed03016
]
G5B38_03640 (rnd)
Enzymes [BR:
paed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
G5B38_03640 (rnd)
Transfer RNA biogenesis [BR:
paed03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
G5B38_03640 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QIE44691
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All DBs
Position
complement(758261..759418)
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AA seq
385 aa
AA seq
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MQTLTTTDALAAFCKEAAGHPYVTVDTEFLRERTYYSKLCLVQLAMPGEGDENAVLVDPL
AEGLSLEPLYELFRDEAVVKVFHAARQDLEIFFVDARLIPTPLFDTQVAAMVCGFGEQAG
YETLVRRIAKQQLDKSSRFTDWSRRPLSDAQKTYALGDVTHLRKIYEYLAKQLEKSGRDK
WVAEEMAVLNDPATYVTRPEDAWMRIKTRNNSGKFLAIVRELARFREAHAQARDIPRNRV
FKDDALVELAATKPASVQDLGRSRLLLREARKGDIAEGILAAVAAGIAVPPEHQPKPDTS
RDKMQVNPAIADLLRVLLKGISDREGVASKLIATASDLDAIAAGHRDAVALKGWRREVFG
DEALRLCAGEIALRVKGSAIETVAV
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacactcaccaccaccgacgcgctggccgctttttgcaaagaggccgccgggcat
ccctacgtgaccgtcgacactgaattcctgcgtgagcgaacctattattccaaactgtgt
cttgtgcagttggcgatgccgggcgagggcgacgagaatgcggttctggtcgatccattg
gcagaaggactgtcgctggagccgttatacgagctgtttcgcgatgaggcggtggtcaag
gtgtttcacgccgcacggcaggatctggagatattctttgttgatgcaaggctgatcccc
acgccgctctttgacacgcaggtggcggcgatggtctgtggctttggcgagcaggcagga
tacgagaccttggtgcggcgcattgccaagcagcaactggacaaatcctcgcgctttacc
gactggtcgcggcggccattgtcggatgcgcagaagacatatgcgctgggggatgtgacg
catctgcgcaagatctatgaataccttgccaagcagctggaaaagagcgggcgcgacaaa
tgggtggcagaagagatggctgtgctcaacgacccggccacgtatgtgacccgccccgag
gacgcgtggatgcggatcaagacgcgcaataattcgggcaagtttctggccatcgtgcgc
gaattggcccggttccgcgaggcccatgcccaagcgcgcgacatcccgcgcaaccgtgtg
ttcaaggatgatgcactggtggaactggccgcgaccaagcccgccagcgtgcaggatctg
gggcgctctcggttgctgctgcgcgaggcccgcaagggggatatcgccgagggcatactg
gcggcagtggccgcagggatagcggtgccgcccgagcaccaacccaagccggataccagc
cgcgacaagatgcaggtcaacccagcgatcgccgatctgttgcgggtcctgctcaaaggc
atttccgaccgcgaaggcgtagcatccaagttgatcgccacggcctcggatctggatgca
atcgcagccgggcatcgcgacgctgtggcattgaagggctggcgccgcgaagtgttcggc
gacgaggcattgcggctatgtgcgggcgagatcgcgttgcgcgtcaagggcagcgcaatc
gagacggtggctgtctag
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