Pseudohalocynthiibacter aestuariivivens: G5B38_09285
Help
Entry
G5B38_09285 CDS
T06463
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
paed
Pseudohalocynthiibacter aestuariivivens
Brite
KEGG Orthology (KO) [BR:
paed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paed03000
]
G5B38_09285
Transcription factors [BR:
paed03000
]
Prokaryotic type
Helix-turn-helix
Other families
G5B38_09285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_8
AAA_lid_14
Sigma54_activat
Sigma54_activ_2
HTH_29
HTH_50
HTH_23
PAS
AAA
HTH_Tnp_ISL3
HTH_28
HTH_30
HTH_1
HTH_3
AAA_14
HTH_24
RWP-RK
AAA_16
HTH_38
HTH_31
Sigma70_r4_2
HTH_17
Sigma70_ECF
Motif
Other DBs
NCBI-ProteinID:
QIE47510
LinkDB
All DBs
Position
1946107..1947933
Genome browser
AA seq
608 aa
AA seq
DB search
MTDALTLRIREEIAASWDRCERQHKLARDAVRPIMRLQSSEIAPRLQQITARTGGRQGFF
RQLASSVGDGKRCLVVTDADGVLVRLESAGGQETEDWNGIALGSCWDERIAGTNGVSMAL
RAGRAFTVGGADHFYQRLRAFACTGTPIFDAMGALVGSVNLVTYDHGTPAEHQITQQYLA
TAADRIQRRLFEQHFSDSLLVTVSSYAPGRPLSGDGLVAVDESGIILGATSAVNRLFQHD
ARNTLKGQPFQAVFNMESDALAKVPERVLSMPKPEGAVVSFSARMPGTARSLHPGATIRT
PARRGRRLPPSLRDLATGCKIMAARCAEARTLFQAGTSLVIEGETSTGKSALIAALAGDA
PLLRVDCATLRDDAADAGDLRSVLTQARVLAMMPEATNDRPTVVFDNIHEMPVAAQSVLR
GLLESIESDAASGDAQTPRLVSVSRRPLMQRVAQGRFRDDLYYMLAGAHVSLPPLRERER
PEILAEVLATRIAGRRITLSDAAVALIKAHTFPGNLRELRTALERALITMAGDQITPVDL
SPTSIRMAEHVPALSDTLAPALAYDDGARVRDALTSSGWNVTEAARRLGMSRATINRKIK
RYGLMRPA
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgccctgaccctcaggatccgtgaagaaatcgccgcgtcgtgggatcggtgc
gagcggcagcacaagctcgcccgcgatgccgtccgcccgatcatgcgcctccaaagctcg
gagatcgcaccacggttgcagcagatcacggcgcgcacaggcgggcggcagggcttcttt
cgccagttggcatcatccgtaggcgacggtaaacgctgtcttgtggtcacggacgccgac
ggggtgcttgtgcggctcgaaagcgctggcggtcaagagaccgaagattggaacggaatc
gctctcggctcgtgctgggatgaacgcatcgccggcaccaatggcgtgtccatggcgcta
cgcgccgggcgcgcctttaccgttggcggggccgatcatttctatcagcggctccgggcc
tttgcctgtaccggcacgccgatttttgacgcgatgggtgcgcttgtgggatcggtcaac
ctagtcacctacgaccacggaacccctgctgaacaccaaatcacgcaacagtatctagca
accgccgcagaccgcatccagcgacgcctgttcgaacagcattttagcgatagcttgctg
gtgaccgtctcctcttatgcgccggggcgaccgctttcgggggacgggttagtggcggtt
gatgagtcagggattatcctcggcgcgacctccgccgtgaaccggctctttcagcacgat
gcgcgcaacacgctgaaaggccaaccgtttcaggccgtgttcaacatggagagcgacgca
ctggcgaaagtgcctgagcgtgtactttcgatgccaaagcctgaaggcgcggttgttagc
ttttctgcgaggatgccgggcactgctcgctcgctgcatccgggcgcaaccatccgcacg
cctgcgcggcgggggcgccgcctgccgccgtcgctgcgcgatttggcgacggggtgcaag
atcatggcggcacgctgcgcggaggcccgaaccttgtttcaggcaggcacctctcttgta
attgaaggcgaaactagcaccggcaaatccgccctgatcgccgcgctggctggcgacgca
ccgctattgagggtggattgcgccacgctgcgcgacgatgcggcagacgcaggtgatctg
cgctcagttctgactcaggcgcgcgttcttgccatgatgccagaggcgaccaacgaccga
ccgacggtggtgttcgacaatatccatgagatgcctgtcgcggcgcaatccgtgctgcgc
ggactacttgagtcaattgagagtgatgctgcatccggcgatgcgcagactccaaggctg
gtatcggtgagccgccgcccgctgatgcagcgcgtcgcgcaagggcgtttccgcgacgac
ctctattacatgctggccggtgcgcatgtatcgctgccacctctgcgagagcgcgagcgg
cccgaaattctggccgaagtgctcgccacccggatcgccgggcggcggataacgctgagc
gacgcggcggttgccctgatcaaagcgcatacgttccccggcaacctgcgagaactgcgg
acggcactggagcgggcattgataaccatggcgggggatcagatcacaccggtggacctg
tccccgacgtcgatcagaatggcagaacacgttcctgccctgtcagatacgctggctccg
gcgttggcttatgacgacggggcgcgggtacgcgacgcgctgacctccagcggatggaac
gtcaccgaggctgcccgccgtctcggcatgagccgcgccacgatcaatcgtaagatcaag
cgctatgggcttatgcgtccggcgtga
DBGET
integrated database retrieval system
