Pseudohalocynthiibacter aestuariivivens: G5B38_16595
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Entry
G5B38_16595 CDS
T06463
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
paed
Pseudohalocynthiibacter aestuariivivens
Pathway
paed03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G5B38_16595 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paed03021
]
G5B38_16595 (rpoC)
03400 DNA repair and recombination proteins [BR:
paed03400
]
G5B38_16595 (rpoC)
Enzymes [BR:
paed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G5B38_16595 (rpoC)
Transcription machinery [BR:
paed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G5B38_16595 (rpoC)
DNA repair and recombination proteins [BR:
paed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G5B38_16595 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
QIE47010
LinkDB
All DBs
Position
3424572..3428816
Genome browser
AA seq
1414 aa
AA seq
DB search
MNQELTNNPFNPVAPAQTFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPCAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMLSEEEFMDAQDAYGLDAFT
ANIGAEAIRDMLAQIDLESEAENLRADLAVATGELKPKKIIKRLKVVESFLESGNRPEWM
VMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYASLQRDGMKGEGMSFSSIDEVQHAL
DAGEVHLHAKITARVPQVDDEGNEVVTRFETTPGRVRLGALLPQNAKAPFTLVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDLKWDIVGETRE
QVKGFEQQYMDGLITQGEKYNKVVDAWSKCNDQVTDAMMGTISASKHDENGTELEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRQHDCGTDRAITAENAVNDGEVVSSLGERVLGRV
AAEDILRPGTDEVIIAEGTLIDERMADAVEEAAVATARIRSPLTCEAEDGVCAMCYGRDL
ARGTMVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQDGTIEFDNAQ
TLENSAGETLVMGRNMKLKIMSGSGQELASHKLGYGTKLHVAEGGTVARGDKLFEWDPYT
LPIIAEKSGTAKFVDLVTGVAVRDETDDATGMTQKIVMDWRAAPKGNELKPEIFVVGDDG
EPMRNDAGNPVTYPMSVDAILSIEEGDKIHAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRYGRDYKNKRRISIEPADDALETVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILAIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
IQDSGETTLLKGEHVDKAEFDAANQKAMDKGVRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQDMRKIATSRDNVVIEARRE
EAEAAAALAAPTEADVVGADPFDTLVETPESRDE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgttcaaccctgtcgcaccggcgcagacgtttgac
gaaatcaaggtcagccttgccagcccagagcgtatcctgagctggtcctatggcgagatc
aagaagcccgaaacgatcaactaccgcacgttcaagcccgaacgtgacggtctgttctgc
gcgcgcatctttggcccgatcaaggattacgaatgcctgtgcggtaaatataagcgcatg
aaatatcgcggcgtcgtttgcgagaaatgcggtgtggaagtcacgctgcaaaaggtccgc
cgcgagcgtatgggccatatcgagctggcggcaccctgtgcgcatatctggttcctgaaa
tcgctgccgtcgcgcatcggtctcatgctggacatgacgctgcgcgatctggaacgggtt
ttgtatttcgagaactacgttgtgatcgagccgggcctcacggacctgacctatggccag
atgctcagcgaagaagagttcatggacgcgcaggacgcctacggtctggacgccttcacc
gcgaatatcggtgccgaagcgatccgcgacatgctggcgcagattgatctggaatccgaa
gccgaaaacctgcgcgccgatctggccgtggccaccggcgagctgaagccgaagaagatc
atcaagcgcctgaaagtggtcgagagcttccttgaatccggcaaccgcccggaatggatg
gtcatgactgtcattccggtcattccgccagagctgcgcccgctggtgccgctcgacggg
ggccggttcgcgacgtcggacctcaacgacctctaccgccgggtcatcaaccggaacaac
cgtctgaagcggctgatcgagctgcgcgcgcccgatatcatcgtgcgcaacgagaagcgg
atgttgcaggaatcggtcgatgcgctgttcgacaacggtcgtcgtggtcgggttatcacc
ggtgccaacaagcgtccgctgaagtcactcagcgacatgctgaaaggcaagcaaggtcgc
ttccgtcagaaccttttgggtaaacgcgtcgacttctcgggtcgttcggtcattgtgact
ggtcccgaactgaagttgcaccagtgtggtctgcccaagaagatggcgctggagctgttc
aaaccgtttatctattcgcggcttgaggccaaaggtctgtcgtcaaccgtcaagcaagcc
aagaagctggtggaaaaggaacgtcccgaagtgtgggatatcctcgacgaggtgatccgc
gagcatcccgtgatgctgaaccgcgcgccgacgttgcaccgtctgggcattcaggcgttc
gaacccacgctgatcgaaggtaaggcaatccagcttcacccgctggtctgctcggcgttc
aatgctgactttgacggcgaccagatggcggttcacgttccgctgagccttgaggcgcag
ttggaagcccgcgtgctgatgatgtccacgaacaacgttctgtcgcccgccaacggcgca
ccgatcatcgtgccgtcgcaggatatgattttgggcctgtattatgcgtcgctgcaacgc
gatggcatgaagggcgaaggcatgtcgttttcgtccattgacgaggtacagcatgcgctg
gacgcgggtgaggtgcatctgcacgccaagatcaccgcacgggttccgcaggttgacgat
gagggcaacgaagttgtcacgcgtttcgaaacgacgccgggccgtgtccgtctgggtgca
ttgctgccccagaacgccaaggcgcctttcactctggtgaaccgcctcttgcgcaagaaa
gaggtgcaacaggtcatcgacactgtctaccgctattgcggtcagaaagagtcggtcatc
ttctgtgaccagatcatgacgatgggcttccgcgaagcgttcaaggctggcatttctttc
ggcaaggacgacatggtgatcccggatctcaagtgggacatcgttggtgagacacgcgag
caggtcaaagggttcgagcagcagtacatggacggcttgatcactcagggcgaaaagtac
aacaaagtggttgatgcttggtcaaaatgtaacgatcaggtcaccgacgccatgatgggc
acgatctcggcatccaagcatgacgagaacggcaccgaactggagccgaactcggtctac
atgatggcccactccggtgcgcgtggttcggttacgcagatgaaacagctgggcggtatg
cgcggcctgatggccaagccgaacggcgacatcatcgagacaccgatcatctcgaacttc
aaggaaggtctgaccgttcttgagtacttcaactcgacccacggtgcgcggaaaggtctg
tcggataccgctttgaaaacggcgaactccggctatctgacccgtcgtctggtagacgtg
gcgcaggactgcatcgtgcgtcagcatgattgtggtacggatcgcgcgatcactgccgaa
aatgctgtgaacgatggtgaggttgtctcgtctttgggcgaacgtgttctgggccgtgtt
gcggccgaggatatcttgcggccgggcaccgatgaggtcatcatcgctgagggcacgctg
attgacgaacggatggcagatgcggtggaagaggccgctgttgcgacggcacgtatccgc
agcccgctgacctgcgaggccgaagacggtgtgtgcgccatgtgctacgggcgtgacctc
gcccgtggtacaatggtcaacaccggcgaggcggtgggtatcatcgccgcgcaatccatc
ggtgagcccggtacacagctgacgatgcggaccttccacatcggcggcgttgcacagggt
ggtcagcagtccttcctcgaagccagccaagacggcacgatcgagttcgacaacgcacaa
acgctggagaactctgcgggcgagacgctggtgatgggtcggaacatgaagctgaaaatc
atgtccggcagcggtcaggaactggccagccacaagctgggctatggcaccaagctgcat
gtcgcagaaggcggcaccgtcgcgcgtggcgataagctgtttgaatgggacccctacacg
ttgcccatcatcgcggagaaatccggtacggcgaagttcgtcgacctcgtgaccggtgtt
gccgtgcgcgacgaaacggacgatgccaccggcatgacccagaaaatcgtgatggactgg
cgcgcggcccccaagggcaacgagctgaagccagagatctttgtcgtcggtgacgatgga
gagcctatgcgtaacgatgcgggcaaccctgtgacctatccgatgtccgtggatgcgatc
ctcagcattgaagaaggtgataagatccacgccggtgacgttgtggcccgtatcccgcgt
gagggcgcgaaaaccaaggacatcaccggtggtctgccacgtgtggccgaactctttgag
gcacgtcgccccaaggaccacgccatcatcgcggaaatcgacggctacgttcgttacggg
cgcgactacaagaacaagcgccgcatttcgatcgagccagcagacgatgcgttggagaca
gtcgaatacatggtgccgaagggcaagcacatcccggtgcaggaaggcgacttcgtgcag
aagggtgactatatcatggacggcaacccggcgccgcacgatatccttgccatcatgggt
gtcgaggcgctggcagactacatgatcgacgaagtgcaggacgtttaccgcctgcaaggt
gtgaagatcaacgacaagcacatcgaagtcatcgtgcgtcagatgctccagaaatgggaa
atccaggacagcggcgaaaccacgctgctgaagggcgagcatgtggacaaggccgaattc
gacgcggccaaccagaaggcgatggacaagggtgtgcggcctgcacaaggcgagccgatc
cttctagggatcaccaaggcatcgttgcagacccggtcgtttatctcggcggcgtcgttc
caagagacaacccgcgttctgaccgaagcatcggttcagggcaaacgcgacaagctggtc
ggtctcaaggaaaacgtcatcgtgggtcgcctgattccggcgggtaccggtggtgccacg
caggacatgcgcaagatcgcaacgagccgcgacaacgtcgtgatcgaagcgcgccgcgaa
gaggccgaagccgctgcagcccttgctgcaccgacagaggccgacgtggtgggtgccgat
ccgttcgacacgctggtggaaacacccgagagtcgcgacgaataa
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