Pseudohalocynthiibacter aestuariivivens: G5B38_17010
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Entry
G5B38_17010 CDS
T06463
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
paed
Pseudohalocynthiibacter aestuariivivens
Brite
KEGG Orthology (KO) [BR:
paed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paed03019
]
G5B38_17010 (hrpB)
Enzymes [BR:
paed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G5B38_17010 (hrpB)
Messenger RNA biogenesis [BR:
paed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G5B38_17010 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
HA2_N
AAA_19
Herpes_TK_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QIE47087
LinkDB
All DBs
Position
complement(3501155..3503593)
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AA seq
812 aa
AA seq
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MTADLPIHDALPALIAAIRARGRAVLQAPPGAGKTTVVPLALLDAGVVQDRIVMLEPRRL
AARAAAERMAETLGEPVGQTVGYRVRGEARISDATRIEVVTEGILTRRLQSQPDLPGVGA
VIFDEFHERSLNADLGLALCLEVAGALREDLILIAMSATLDAGPVAALMDDAPMITSEGR
SYPVDIRWLDRPLPKKSRLEPAMADLICTALEADEGGLLAFLPGEGEIRRTAGLLSSRVP
ADCQIRPLYGAMPFAEQRAAIAPSKGGRKLVLATSIAETSLTIEDIRIVVDSGRSRRARF
DPGSGMARLVTDPVSRAEATQRTGRAGRVAPGTAYRLWTRGEQGALPAFPPAEIEAADLA
PLALELAMWGAAPDQLPLLTQPNPGSYAEARALLSMLGALDYTGRITDHGRALVALPLHP
RLAHMLALAGPDAAPFAALLADRDPLPRAAPSDLALRLTAIRDPQARLPHEPNRAALARI
RQEAKRLARAAKSTRKEGMSDAEMAALAYPDRIGLRRPGDAPRYILSGGKGAVLPDDDTL
AGTRLIVATDLDGDPREARIRQAIAISEGELRALYADQISWQDTCHWSRRERRVITRRQE
RFGALVLDDRIWKDAPTDAIARGMLDGVSDLGLNWSDAASRFAARVALVRADQPDLPDMS
DDALMQRLDEWLLPHLGGVRTAQEWKRFDMLESLRAQLDWNQMQALDRAAPAHFTTPLGR
RIPIDYASDPPEISLRLQEMFGQTTHPTIGQTPLKVTLLSPAHRPVQTTTDIPGFWASSY
ADVRRDMRGRYPRHPWPEDPTQADPTLRAKRR
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgactgcagacctgccgatccatgacgccctccctgcgctgatcgccgcgatccgtgcg
cgtggtcgcgcggttctacaggcgccccccggcgcgggtaagacgacagtggtgccactg
gcattgctggacgctggagttgtgcaggaccgtatcgtgatgttggagccgcgccgtctg
gcggcgcgcgccgctgccgaacgcatggccgaaacgctgggcgagccagtcggacagacg
gtcggctaccgcgtgcgcggtgaggcgcggatcagcgacgccacccgtatcgaggtcgta
accgaaggcatcctgacacgccgcctgcaatcgcaacctgacctgccgggcgtgggtgct
gtgatctttgacgaatttcacgaacgctcgctcaatgccgatctgggccttgcgctctgc
ctcgaagtggctggcgcgctgcgtgaggacctgatcctgatcgccatgtccgccacgctg
gatgccggaccggtcgcggcgctgatggatgatgccccgatgatcacctctgagggtcgc
agttatccggtcgatatccgttggctggaccgccccctgcccaagaaatcccggctcgag
cctgcaatggccgatctgatctgtaccgcgctggaggctgacgaaggtggcctgctggcg
tttctgcccggcgagggcgaaattcgccgcacagccggattgctgtcgtcgcgcgtaccc
gccgattgccaaatccgcccgctctatggcgcaatgccctttgccgagcagcgcgccgcc
atcgcgcccagcaaagggggacgcaaactggtgctggccacgtcgattgccgaaacatcg
ctgaccatcgaggatattcgcatcgtggttgatagcgggcggtcacgtcgggcgcggttc
gatcccggctctggcatggcccggctggtgaccgatcccgtcagccgcgccgaggcgacg
cagcgcacgggccgcgcagggcgcgtcgcaccgggtacggcgtaccggctatggacccgc
ggcgagcaaggcgcgttgcctgcctttccacctgccgagatcgaggcggcagatctggcc
ccattggcgctggaactggcgatgtggggcgcggcaccggatcagctgccgctgctgacc
cagcccaatcccggcagctatgccgaggcgcgcgcgttgctgtcgatgttgggcgcgttg
gactataccggtcggatcactgatcacggccgggcgctggtcgccctgcccctgcatcca
cggctggcgcatatgctcgcgctggccgggccggatgccgcgccatttgctgccctattg
gcggatcgtgaccctttgccacgcgcagcgcccagcgatctggcactgcgcctgaccgcg
atccgcgatccgcaggcgcgcctgccgcatgagccgaaccgcgcggccctcgcgcgtatc
cgccaagaggccaagcggctggcgcgcgcggccaaaagcacccgcaaagaggggatgagc
gatgccgaaatggccgccctcgcctaccccgatcgcatcggtctgcgccgccccggtgat
gccccgcgttatatcctgtcaggcggcaagggcgcggtgctgcccgatgacgacacgctg
gcaggcacccggctgatcgtcgccaccgatctggacggcgatccacgagaggcacgcatc
cgacaagcgattgcgatcagcgaaggcgaattgcgtgcgctttatgcggatcagatcagc
tggcaagacacctgccactggtcgcgccgcgaacgtcgggtgatcacgcgccggcaggaa
cgttttggcgcgctggtactggatgaccgcatctggaaagacgccccgacggatgccatc
gcgcggggcatgctggacggcgtgagcgatctgggcctgaactggagcgatgccgccagc
cgtttcgccgcgcgggtcgcattggtgcgcgcagaccaacccgacctgcccgacatgtcc
gacgacgcgctgatgcagcggctcgatgagtggctgctgccacatctcggcggcgtccga
accgcgcaggaatggaagcgtttcgatatgctagaatcgctgcgcgcccagctggactgg
aaccagatgcaggcactggaccgcgcggcaccggcgcatttcaccacacccttggggcgc
aggatccccatcgattatgccagcgatccgcccgaaatcagcctgcgcctgcaagaaatg
ttcggccagaccacgcatccgaccatcgggcagacgccgctcaaggtcacgctgctgtca
cccgcgcaccgcccggtccagaccacgaccgacatccccggtttctgggccagttcctat
gcggatgtgcgccgcgacatgcgcggacgatacccccggcacccctggccagaagacccg
acgcaggccgacccgacattgcgggcgaaacggcgatga
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