Paenibacillus sp. FSL R7-0331: R70331_23655
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Entry
R70331_23655 CDS
T03357
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
paee
Paenibacillus sp. FSL R7-0331
Pathway
paee02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
paee00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
R70331_23655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paee03021
]
R70331_23655
Transcription machinery [BR:
paee03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
R70331_23655
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
DUF2408
Motif
Other DBs
NCBI-ProteinID:
AIQ54223
LinkDB
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Position
complement(5278014..5279147)
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AA seq
377 aa
AA seq
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MANDQHTELEAEFTLDQVKDQLIEQGKKRSSLNYKDIMEKLSPFDQDPEQMEEFYEQLSD
HGIEVVNDNEDEGSPLRQGEDSENNDSDDFSFDDDLSLPPGIKINDPVRMYLKEIGRVPL
LSADDEVELAMRIKNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA
VEKFDHNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELG
REPSPEEIAAEMELTVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAA
AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL
RKLRHPSRSKRLKDFLE
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgatcagcatactgaactggaagcagaatttactctggatcaggttaaggac
cagcttattgaacaaggtaaaaaaagatcatctctgaattacaaagatatcatggagaaa
ctgtcgccgtttgatcaggaccccgagcagatggaggagttctacgagcagctcagcgat
cacgggattgaagtggttaatgataacgaggatgaaggctctccgctgcgtcagggggag
gacagtgagaataacgatagtgatgatttcagctttgacgacgacttgtcgcttccgcca
ggaatcaaaattaacgaccctgtccggatgtatctgaaggaaatcggccgtgtgcccctg
ctctctgcggatgatgaagtagagctggccatgcgcatcaagaacggtgacgaggaagcg
aagcgccgtctggcggaagccaacctccgtctcgttgtaagtatcgccaagcgttatgtc
ggacgcggcatgctgttcctggatctgattcaggagggcaacatgggtctgatcaaagcg
gttgaaaagttcgaccacaacaaaggcttcaaattcagtacctatgccacatggtggatc
cgccaggcgatcacccgtgcaattgccgaccaggcccgcacgatccgtattccggtgcat
atggttgagacgatcaacaagctgatccgtgtctcccgccagctgctgcaggaactggga
cgcgagccgtcgccggaggaaattgctgcagagatggaactgaccgtggagaaggtcaga
gaaatcatgaagattgctcaagagccggtatcgctggaaacaccgatcggggaagaggat
gactcgcatctgggcgatttcattgaggatcaggaggcgctggcgcctgcggatgcagct
gcttatgagctgctgaaggaacagctggaggatgtactggacacgctcaccgagcgtgaa
gagaacgtgcttagactccgtttcggtctggatgacggacggacaagaacactagaggaa
gtaggcaaggtatttggcgtaacccgtgagcggattcgtcagatcgaagccaaggcgctg
cgcaagctgcgtcatccgagccgcagcaaacggcttaaggatttcctcgaatag
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