Paenibacillus sp. FSL R5-0345: R50345_00275
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Entry
R50345_00275 CDS
T03333
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R50345_00275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paef03400
]
R50345_00275
Enzymes [BR:
paef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R50345_00275
DNA repair and recombination proteins [BR:
paef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R50345_00275
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
AAA_16
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIQ33237
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Position
54136..57660
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AA seq
1174 aa
AA seq
DB search
MLQGIIEAFSKDPDFQSITQGVAAGMKEQLISGLTGSARQIMLAALHEETARPLLVVTHN
MFSAQKMADDLQEALSPERVLLYPANELVAAEAAVSSPETLAQRIDVLTKCAQGFRGIVV
VPYSGVRRLLPAPEVMAEAQVTVSQDGTLALDEFLMSMIEMGYERVERVENRGELSVRGG
IIDFYPMTSPLAYRVELFDDEVDSIRTFDPVDQRSIDKVRSVKITPAKEIIASRFRQESA
SAEASVMLERQLEKMADRQAKLRLKEEIGRELEMLREGTYFPEIYKYISLLYPERSHLFD
YMAQDTILILDEPTRLLETAKQLERDESEWNLHLMQNGKTLPDLDLSVETDVVMYKRPFQ
SLFMSIFLRQVPHIQPQNILGFISRGMQDFHGQMNVLKSEMERWQKSGVKVMMLASSEER
IERVRRVLYDYGIDEPTIVQGNLGSGFELPSIHLAVITEGEMFSQKQRKARKISKGIDNA
ERIKSYTELKIGDYVVHQNHGIGKYMGIGTLEVSGIHRDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKVYKLGGNEWTRVTNKVRSSVQDIADDLIKLYAERQSAAGYGFEKDTQ
EQREFEEMFPYEETRDQLRAIEEIKKDMEQNRPMDRLLCGDVGYGKTEVAIRAAFKSAIE
GKQVAVLVPTTILAQQHYETFRERFANYPLNIQVLSRFRSRKEQNETIKGVRAGTVDVVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQTLTREAVERELARGGQVYYLYNRVQGIQEMAAQ
ISMLVPEARVGIGHGQMSEAELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIRKRKVTVLGEEDTSLKEGNTVIDLS
IDAYLPSEYIYDSIQKIEIYKKVAAVTSFDDASELEDELLDRFGELPEAVVNLLTVARLK
VYGKMYGIDSMIRRGDDVTLNFYEGSLGALDTAKLAKVGNSFERRVQFDRDAKASIRVKS
KDLSDKQLLDLLEQFLKEAKQSFKSKGELHNVVK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaaggtattatagaagctttttccaaggatcccgatttccagtctatcacccag
ggtgtagctgcaggtatgaaagagcagctcatatcggggcttacaggttcagctagacag
atcatgcttgcagcactgcatgaagagacagctcgtcccttgcttgtggtgactcataat
atgttttcggctcagaaaatggccgatgatttacaggaagcgctttccccggaacgagta
ctgctctatcctgctaatgaacttgtggctgcggaagcggctgtctcaagtccagagaca
ttagcccagcgtattgatgtactgaccaaatgtgcccagggcttccgtggtattgttgta
gttccctactcgggagtgcgcagattgctccctgcaccagaggttatggcagaggcacag
gttacggtttctcaggatggaacgcttgctctggatgaattcttgatgtccatgatcgaa
atgggttatgaaagagtagagcgggttgagaatcgcggtgaactgagcgtaagaggtgga
attattgatttttatccaatgacttctcctttggcatatcgtgttgagttatttgatgat
gaggttgattcgatcagaacttttgatccagtcgatcagcgttctattgataaagtacga
agtgtgaagattacaccggctaaagagattatagcgagcaggtttcgccaggaatctgct
tctgctgaagcatctgttatgctggaacggcagctagagaaaatggcggatcggcaggct
aagttgcgtctaaaagaagaaattggacgcgagctagaaatgctgcgcgaaggaacctat
tttcctgaaatctataaatatatcagtcttttataccctgaacgctctcatttatttgat
tacatggcccaggatacgatccttattctcgatgagccgacaagactgcttgaaacggcg
aaacagctcgaaagagatgaatcggaatggaacctccatctgatgcaaaacggcaaaaca
ttgccggatctggatctctctgtcgagacagatgttgtgatgtacaaacgtccgttccaa
agcctgtttatgtcgatctttttgcgccaggtcccacacattcaaccacagaacattctt
gggtttattagtcgtgggatgcaggatttccatggtcagatgaatgtgcttaaatcggaa
atggagcgttggcagaagtccggtgtaaaggtaatgatgcttgcgagcagtgaagaacgg
attgaacgtgtgcgcagagtcctttatgactacggcattgatgagccaacgatcgtacaa
ggaaacctgggttcaggctttgagctgccttctattcatttagccgttatcactgaagga
gagatgttctctcagaagcagcggaaggcacggaagatctccaaagggatagataatgct
gaacggatcaagagttatactgagctgaaaattggtgattatgttgttcaccagaaccat
ggtatcggtaagtatatggggatcggcacgctggaggtcagcggtattcatcgcgactat
atgcatattttatatgcgggtggcgataagctctcggttccgattgagcaaattgacttg
attcagaaatatgtcggttcagaagataaagagccgaaagtatataaattaggcggtaat
gaatggacgcgggtgaccaataaggtccgctcttccgttcaggatattgctgatgatcta
atcaaactgtacgctgaacgccaaagtgcagcagggtatggttttgagaaggacacacag
gaacagcgtgaatttgaagaaatgttcccttacgaggagactcgggatcagcttcgagcg
attgaagagattaagaaggatatggaacagaatcgtccaatggatcggctcctttgtgga
gacgttggatatggtaagacggaagtagctatacgagcagcctttaaatcagcgattgaa
ggtaaacaggtggctgtgctggtaccgacaacgattctagctcagcagcattatgagacc
ttccgggaacgcttcgcaaattatccgctaaatattcaagtcctaagtcgtttccgcagc
cgtaaggagcagaatgagacgattaaaggtgttcgggcaggaacggttgacgtggttatt
ggtacccaccgtttattgtctcaggaccttgtatttaaggacttaggtttattgatcgtg
gatgaggaacagcgatttggcgtgactcataaagagaagctgaagaagttaaaaacgaat
gtagatgttcttaccctgacagcaactccaattcctcgtacattgcatatgtcgatgctg
ggagtgcgtgatttgtctgtcattgagacgccgccggagaaccgtttccccgtgcagact
tatgttgttgagcatagtcagacgcttacgcgggaagctgtagagcgcgaattagctcgt
ggcggtcaagtttactatctctataatcgtgtgcagggcattcaagaaatggccgctcaa
atttccatgctagttcctgaggctagggtaggcatcggacatggtcaaatgtcggaagct
gagctcgagaagacgatccttgattttcttgatggagaatacgatgtgctggtcagcaca
agtattattgagacgggtgtagatattcctaacgtaaatacacttattgtgcatgatgcg
gataagatgggcttgtctcagctgtatcagttgcgtggacgtgtaggccggtccaaccgg
attgcgtacgcctatttcacgtatcaacgggacaaggttctgacggaagtggcagagaag
cggctgcagtctattaaggaatttacggaactcggttctggtttcaaaatagcgatgcga
gatttatctattcgcggtgccggcaacttacttggcgcagaacagcatggttttattgca
tccgtaggatttgatctatactcacaaatgctggcggaggaaattcgcaagcgtaaggtt
actgtacttggtgaggaggatacgtcccttaaagaaggcaatactgtcattgatttgtcg
attgacgcgtatctgccatccgagtatatttacgacagtatccagaaaattgaaatctac
aaaaaagttgcggcagtgacatccttcgatgatgcttctgagcttgaggatgagctcttg
gatcggttcggagaactgcctgaagcagttgttaatctactaactgtggctcgtctgaaa
gtgtatgggaaaatgtatggtattgattccatgatcagacgtggtgatgatgttaccctg
aatttctacgaggggagtcttggcgctctggatacagcaaaactcgctaaagttggaaat
agcttcgaaagacgtgtacaattcgatagagatgctaaagccagtatccgagttaaatcg
aaagatttaagtgataaacagctgcttgacttgcttgaacagtttcttaaggaagctaaa
cagtcttttaaatcgaagggagaactacacaatgtcgttaaataa
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