Paenibacillus sp. FSL R5-0345: R50345_09705
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Entry
R50345_09705 CDS
T03333
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
R50345_09705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paef03400
]
R50345_09705
Enzymes [BR:
paef01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
R50345_09705
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
R50345_09705
DNA repair and recombination proteins [BR:
paef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
R50345_09705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
RNHCP
Motif
Other DBs
NCBI-ProteinID:
AIQ34862
LinkDB
All DBs
Position
2180284..2181120
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AA seq
278 aa
AA seq
DB search
MPELPEVETVKRTLNDLVNGKQIDSVTVRLARIIQRPDDIQAFANLLAGHSIVNVERRGK
FLRIVLDGLVLVSHLRMEGRYGLFSKDDPLDKHTHVIFHFTDGTELRYTDVRQFGTMHLF
QIGEDLQLPPLNKLGQEPLEPSFTPEKFKQIVSGKSTKIKSLLLNQEYIVGIGNIYVDES
LHRAGIHPEVSAKDLSDDQLDQLHHAIVSTLTEAVNAGGSSVKSYVNGQGESGTYQQQLL
IYGRKDQPCNNCGTMIEKTVVGGRGTHYCPSCQRKSEN
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccggaagtagagacagtcaagagaacactgaatgatttagttaatgga
aagcagatagatagtgtaaccgtccggctggctcggataattcagcgaccggatgatatt
caggcttttgccaacctgctcgcaggtcatagcattgttaatgttgaacgaagagggaaa
tttttgcgcatcgtgctagacggtctggtgctggtatctcatttacggatggagggccgt
tacggacttttttcgaaagatgatccactggacaagcatacacatgtgatattccatttt
accgacggcacggaactgcgttatacggatgttcgtcagtttggtacgatgcatcttttt
cagattggtgaagaccttcagcttcctcctcttaataagctagggcaggaaccgctggag
ccgtcctttacgccggagaagtttaagcagattgtatcaggcaaaagcacaaaaattaaa
tcgctgctgctgaatcaggaatatatcgtcggcataggtaatatttatgtagatgagtcg
ttacatcgtgcagggattcatccagaagtcagcgctaaggatctatcggatgatcaactc
gatcagctacatcacgctattgtcagcacgctgacggaagcggtaaacgctgggggttca
tctgtaaaatcatatgtgaatggtcaaggtgagagcggcacttatcaacaacagctgttg
atttacggtcgtaaagatcagccgtgtaataactgtggaacaatgattgagaaaactgtt
gtaggtggccgtggcacgcattattgtccaagctgtcagcgcaagtcagaaaactga
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