Paenibacillus sp. FSL R5-0345: R50345_10745
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Entry
R50345_10745 CDS
T03333
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50345_10745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paef03019
]
R50345_10745
03009 Ribosome biogenesis [BR:
paef03009
]
R50345_10745
Enzymes [BR:
paef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R50345_10745
Messenger RNA biogenesis [BR:
paef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R50345_10745
Ribosome biogenesis [BR:
paef03009
]
Prokaryotic type
rRNA helicases
R50345_10745
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AIQ35040
LinkDB
All DBs
Position
2431290..2432936
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AA seq
548 aa
AA seq
DB search
MKTFAEFGLEPRVLQAITELGFEEATPIQEQSIPLALTGSDLIGQAQTGTGKTAAFGIPL
ISKINREDEKILALIMAPTRELAIQVSEEIGKLSRFKGLRSLAIYGGQDIGRQIRGLKKK
PQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQTILKLVPEERQTML
FSATMPPNIQRLAQQFLNNPQHVSVIPKQISAPLIDQAYVEVPERQKFEALSRLIDMESP
ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR
HRITRKPLPTMAEAIEGKQRVTAERLLEMVESGELNEYKGISIQLLEQYDSVQLLSAAMK
LLTGDKKDSTIELTPEDPIRAKRRGGKNDIRSGRKPNGGYGGNRGTSGGSTGGYRGNRDN
NGGGSRGGYNSGGSNYGSGSGGYGGGYKGNRDSAANRDGGANRSADRKPSTRPSSTSTRP
AKREDFDN
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacattcgcagaatttggcttggagccaagagtgctacaagcaatcacagagtta
ggatttgaggaggcaacaccgatacaggagcagtcaattccattggcattgactgggtcg
gatctgatcggtcaagcacagactggtacaggtaagactgctgcttttggtatccccctc
atttcgaagattaatcgtgaagacgaaaaaattctggcacttattatggcaccaactcgt
gagttggccattcaagtatcagaagaaatcggtaagctaagccgtttcaaaggtcttcgt
tcgttggcaatttatggcggacaagatattggtcgccaaattcgtggtctaaagaagaaa
ccacaaattatcattggtacaccaggtcgtttgcttgaccatatcaaccgtaaaaccatt
cgtttggatgatgttcaaactgttgtattggatgaagcagatgaaatgctggatatgggc
tttatggaagatattcagacaatcctcaagctcgttcctgaagagcgtcaaactatgttg
ttctcggctacaatgcctccaaacattcaacgtcttgctcagcaattcttgaacaacccg
caacacgtctccgtaattccgaaacaaatcagtgctccgctgattgatcaagcatatgtt
gaagtacctgaacgtcaaaagttcgaagcacttagtcgtttgattgatatggaatctcct
gagcttgcaatcgtgttcggacgtacgaaacgccgggtagatgagcttgcagaagctttg
caaaaacgtggatactctgctgatggtttgcatggtgacctgtctcagaaccaacgtgat
gctgtaatgcgtaaattccgtgatggcagcattgatgtgctggtagctactgacgtagcg
gctcgtggtttggacgtatccggtgttactcatgtaattaactttgacttgccgcaagat
ccagaaagctatgtacaccgtatcggtcgtactggtcgtgctggtaaagaaggtacagct
tggtctttcgttactccacgcgaaatggatcacctgcatttgatcgaacgcgttactcgt
caccgtattactcgcaaaccattgccaacaatggctgaggctatcgaaggtaaacaacgc
gtaacagctgaacgtttgcttgagatggtagagagcggtgaattgaatgagtacaaaggt
atttctattcaattgcttgagcaatatgattccgttcaattgctgtcagctgcaatgaag
cttctgactggtgataagaaggattccacaattgaattgactcctgaagatccaatccgt
gctaaacgtcgtggtggtaagaacgacattcgcagtggccgcaaacctaatggtggttat
ggcggaaaccgtggcacttccggtggcagcactggtggataccgtggaaaccgcgacaac
aacggtggcggtagtcgtggcggctacaacagcggtggcagtaactatggtagcggcagt
ggcggttatggcggtggctataaaggcaatcgtgatagcgcagctaaccgtgatggtgga
gcgaaccgcagtgcggaccgtaaaccctctactcgcccaagcagcacaagcacacgtcct
gcaaaacgtgaagatttcgataactaa
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