Paenibacillus sp. FSL R5-0345: R50345_18435
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Entry
R50345_18435 CDS
T03333
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50345_18435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paef03019
]
R50345_18435
Enzymes [BR:
paef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R50345_18435
Messenger RNA biogenesis [BR:
paef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R50345_18435
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SUa-2TM
AAA_22
Utp25_C
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AIQ36427
LinkDB
All DBs
Position
complement(4065091..4066446)
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AA seq
451 aa
AA seq
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MTFNELNIMPAILKALTKENYTSPTPIQEQSIPAVLAGRDLLGCAQTGTGKTAAFSVPII
QLLSEQTNSNKTNNVRRIRSLILTPTRELAIQIADNIKAYSQYTDIRSAAIVGGVSQKVQ
ERALNQGADILIATPGRLIDLINQKRVDLQHVQILVLDEADRMLDMGFIHDVKRIIAKMP
TKKQTLFFSATMPTEISKLIKTLLVNPVKVEITPVSSTADRIEQSIYLLENGNKQNQLNL
LLQDKSIVSALVFTRTKRGADRVTRDLAKVNISAQAIHGNKSQNDRQNALRNFKSGATRV
LVATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCESEELPFLK
DIEKLIGKSIPEVKDHPYPMSRKTQMKTERSSKPSGSRPANSRPSSGKPSSAKPAASKPA
ASKPAKAKPKSNPPLKPKSEWFTKGRQTSSR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaacgaactgaatattatgcctgcgattttaaaggctttaaccaaagaaaac
tatacatcacctacacctatacaggaacaatcgatcccagccgtattagctggcagagat
ttacttggatgtgctcaaacgggaacaggaaagacagctgcattttctgtacctattatt
caattattaagcgaacaaaccaattccaacaaaacaaacaatgtgcgacgcattcgctcg
ctgatcttaacaccaacaagagaactagcgatccaaattgctgataacataaaagcgtat
agccaatatacagatatccgctctgctgccatcgttggcggtgtatcacagaaagtgcaa
gagcgtgccctgaatcaaggtgctgatattctaatagctacacctggtagacttatcgac
ctgatcaatcaaaaacgtgtggatttgcagcatgtccaaattcttgtcttggatgaagct
gaccgtatgctagatatgggctttatccatgatgtgaaacgaatcatcgctaaaatgcct
acgaagaaacaaacattattcttctctgcaacgatgcctactgagatctcaaaattgatc
aaaaccttgcttgtgaacccagtgaaagtagaaatcacccccgtatcttctactgcggat
agaatcgaacaatcgatctatttattagaaaacggaaataaacagaatcaattgaatctt
ttgttacaggataaatcgattgtctctgctctagtgtttactcggaccaaacgtggtgct
gaccgtgttacacgtgacctagcgaaggtgaacatttctgcacaagccattcacggcaat
aaatcacagaatgatcgtcagaatgcattgcggaattttaaaagtggtgcaacccgcgtt
ctagtcgctacggatatcgccgcgcgcggaattgatatcgatgagctgtctcatgtaatc
aacttcaacttgccgaatattccagaaacttatgtgcaccgaatcggacgtacgggcaga
gcggggctgagtggaactgcaatttctttttgcgaatctgaagagcttccgttccttaaa
gatatcgagaaattgatcgggaaatcgattccagaagtgaaggatcacccgtatccgatg
tctcgtaaaacgcagatgaagacagaacgatcttcgaaaccgtcaggttcaagaccagcg
aattccagaccgtcatctggtaaaccgtcatcagctaaaccagcagcttcaaaaccagcg
gcatctaaacctgccaaagcaaagccaaagtctaaccctccattaaagccaaagtccgag
tggttcactaaaggaagacaaacgagcagcagataa
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