Paenibacillus sp. FSL R5-0345: R50345_18460
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Entry
R50345_18460 CDS
T03333
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50345_18460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paef03019
]
R50345_18460
Messenger RNA biogenesis [BR:
paef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R50345_18460
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_KhpA-B
HDOD
KH_2
HOK_GEF
Innexin
DUF4083
Motif
Other DBs
NCBI-ProteinID:
AIQ36432
LinkDB
All DBs
Position
complement(4069947..4071488)
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AA seq
513 aa
AA seq
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MQAWIWVIIVLVVAALFFGFGYFIRKSLAEAKIQSAEREAVVIVENAKKDAEALKKETVL
EAKDEVHRIRTEAEKETRERRNEIQRQERRLLQKEESLDKKMESLERKEEQVANKEKRID
ETQQQIDVIYKNQVTELERISNLSIEDARSIILSNVEQEVRHETAQMIKEIEQQAKEEAD
KKSREIITLAIQRCAADHVAETTVSVVTLPNEEMKGRIIGREGRNIRALETLTGIDLIID
DTPEAVILSGFDPIRREVARTALEKLVADGRIHPARIEEMVEKSRKEVDERIREYGEQAT
FEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLTGLMAGELGEDIVLAKRAGLL
HDIGKALDHEVEGSHVEIGVELAKKYKEHPVVINSIASHHGDCEATSVIAMLVGAADALS
AARPGARRETLETYIKRLEKLEEISESFEGVEKSFAIQAGREVRVMVQPEKIDDAEAFRL
ARDITKMIESELDYPGHIKVTVIRETRAVEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcatggatctgggtcattatcgttctcgttgtagctgcattattctttggattc
ggttattttattcgtaaatcccttgcagaagctaaaattcaaagcgcagaaagagaagcc
gtagtcatcgtggagaacgcgaagaaggacgcagaggcgctgaagaaagaaacggtattg
gaagctaaggacgaagtccatagaatccgtactgaagctgagaaagaaactcgtgaacgt
cggaatgaaatccaacggcaagagagacgtttgctgcaaaaggaagaatctctggataaa
aaaatggaatcgcttgaaagaaaagaagaacaagtagctaacaaagagaaacgaattgat
gaaacccaacagcaaattgatgttatttacaaaaaccaagtcactgaattggagcgcatt
tccaatttaagcatcgaagatgcaagaagtattattcttagcaatgttgagcaagaagtt
cgccatgaaacggctcaaatgatcaaagaaattgaacagcaggcgaaagaggaagcggat
aagaaatcccgcgaaatcatcacactcgctatccaacgctgtgcagctgatcacgtagcc
gagacaacagtttcagttgttaccctgccgaacgaagagatgaaaggtcggattatcggt
cgtgaaggccgtaacattcgtgcactcgaaactcttacaggtatcgacctcattattgat
gatactccggaagcagttattttgtcgggatttgatccaatccgtcgcgaagtggcccgt
acggcacttgagaaactagtggcagatggacgtatccaccccgctcgtattgaagagatg
gtggaaaaatcccgcaaagaagtggacgaaagaattcgcgaatatggtgaacaagctact
ttcgaagtgggtgttcatggattgcatccagacttgatcaagattctgggtcgtctgaaa
ttccgtacaagctatggtcaaaatgtattgaagcactctatggaggttgcttatttgact
ggactgatggccggtgagcttggggaagacatcgtgcttgcaaaacgtgcaggattgctt
catgatatcggcaaagcgctggatcatgaagtagaaggatcgcatgttgagatcggcgtt
gaactagcgaagaaatataaggaacatccggttgttatcaacagtatcgcgtctcatcat
ggagattgcgaagctacctcggttattgctatgttggttggtgccgctgatgcattgtca
gcagcaagacctggcgctcgccgtgaaacactggaaacgtatattaaacgtctagaaaaa
ctggaagaaatctcagagtcgttcgaaggcgttgagaaatcatttgctattcaggcgggc
cgtgaggtacgcgtgatggtacagccagagaagattgacgatgcagaggcattccgtctt
gctcgcgatattacgaagatgattgaaagtgaactggattatccaggacatatcaaagtt
accgttattcgtgagacacgggctgttgaatacgctaaatag
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