Paenibacillus sp. FSL R5-0345: R50345_18585
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Entry
R50345_18585 CDS
T03333
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50345_18585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paef03019
]
R50345_18585
03016 Transfer RNA biogenesis [BR:
paef03016
]
R50345_18585
Enzymes [BR:
paef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
R50345_18585
Messenger RNA biogenesis [BR:
paef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
R50345_18585
Transfer RNA biogenesis [BR:
paef03016
]
Prokaryotic type
tRNA degradation factors
R50345_18585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
S1_RRP5
OB_RRP5_4th
KH_N4BP1_2nd
Motif
Other DBs
NCBI-ProteinID:
AIQ36456
LinkDB
All DBs
Position
complement(4097741..4099843)
Genome browser
AA seq
700 aa
AA seq
DB search
MEKRVEMQLGGRRLVLETGRLAKQANAAVMVRYGDTAVLCTVTASSEPKDLDFFPLTVNY
EERLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQD
CTPEIAAMIGTSAALSISDVPFDGPIGGVNVGRINGEFIINPDIAQQAISDIFLTVAGTK
DAIMMVEAEANEVPEEVMLEAIMFGHEEIRNIVATIEELVAIAGKEKMAVKLHAVNAEVN
TEVRAFAQARLVDAVKIAEKHARQEAIDVVNNETVTYFAEKYIETPELLKDVKEVLHDIV
KEEVRRLITHDKVRPDGRKLDEIRPIDCDTNLLPRTHGSGLFTRGQTQALSVCTLGALGD
VQILDGIDLTETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEF
PYTIRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTDI
QGMEDHLGDMDFKVAGTAAGVTAIQMDIKIDGIDRQILHEALQQAKEGRMHILGKMMEAI
SEPRANLSKYAPKIIIININPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIGSSD
EEMIQKARSIIEGIVREVQVGEIYVGTVRRIEKFGAFVELIPGKDGLVHISQLSTERVAK
VEDVVAVGDTITVKVTEIDQQGRVNLSRKAVLTSETSAKA
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacgtgtagaaatgcagctaggcggaagacgccttgtgctggaaacgggccgc
ctagctaaacaagcaaacgcagccgttatggtgcgttacggagatacagcagttctgtgt
actgttaccgcttcaagcgagcctaaagatttggattttttcccgctgacggtcaactat
gaggaaagattatatgcagtaggtaagatcccaggtggttttattaaacgtgaaggcaga
ccgagtgaaaaagcgattctgtccagccgtttgactgaccgcccgattcgcccactgttc
ccagaaggattccgtaatgatgtacaagttctcaatctggtaatgagtgtggatcaagat
tgcacaccagaaattgccgctatgattggtacttctgcagcacttagcatttccgatgta
ccgtttgacggacctatcggtggcgtcaatgtaggccgcatcaatggcgaatttatcatc
aaccctgatattgctcagcaagcaattagtgatattttcttgactgttgctggtacgaag
gatgctatcatgatggtagaagcggaagctaatgaagttccggaagaagttatgctcgaa
gcgattatgttcggacatgaagaaatccgtaatatcgtagctacaattgaagaattggtt
gcaatcgctggtaaagaaaaaatggcagtgaagctgcacgcagtaaatgctgaagtgaac
actgaggttcgtgcgtttgcacaagctcgtttggttgatgcagttaaaattgctgagaag
catgctcgtcaagaagctattgatgtggtaaataatgaaacagttacgtatttcgctgag
aaatacatagagactccagaacttctgaaggatgttaaggaagtattacatgacatcgtg
aaggaagaagttagacgtctgattacgcatgataaggttcgtccagatggacgtaagctg
gatgaaattcgtccgattgattgtgatactaacctattgccgcgtactcatggttctgga
ttgttcacccgtgggcaaacgcaagcacttagcgtatgtacgctaggcgcactcggcgat
gtgcaaattcttgacggtattgatctgactgaaactaaacggttcatgcaccactataat
ttccctccgttcagcgtaggggaagcacgtccgcttagagcaccaggtcgtcgtgagatt
ggtcatggagcattaggtgaacgcgcattgtctaaagtgatcccaagtgaaactgaattc
ccgtacacgattcgtcttgtatctgaggttatcgagtctaatggttctacttcacaagct
agtatttgtgcaagtacgctggctatgatggatgcaggcgtaccgatcaaagctccagtt
gctggtgtagctatgggtctaatcaaggatggagatcatgtgtctattttgacagatatt
caaggtatggaagatcatcttggagatatggactttaaggtagcgggtactgcagcaggt
gtaactgcgatccaaatggacattaagatcgatggtattgaccgtcaaattcttcatgaa
gcactgcaacaggctaaggaaggccggatgcacatcttaggtaaaatgatggaagccatc
tctgagcctagagctaacctgtccaaatatgctccaaaaatcattatcatcaacattaat
ccggataaaatccgtgatgttattggtgcgggtggtaaaatcatcaacaaaattatcgaa
gaaaccggcgtgaaaatcgacatcgaacaagatggacgtgtctttatcggatcttctgat
gaagaaatgattcaaaaagcccgttcgatcatcgaaggtattgtacgtgaagtacaagtc
ggtgaaatttatgtgggtacagttagacgtattgagaaattcggcgcatttgttgaactc
attccgggtaaagacggattggtgcatatttcccaattgtctactgagcgtgtagcgaag
gtagaagatgttgttgctgttggcgacaccattacagttaaagttactgaaatcgatcaa
caaggccgggttaacttgtctcgtaaagcggtattgacttcagaaactagcgctaaagca
taa
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