Paenibacillus sp. FSL R5-0345: R50345_18890
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Entry
R50345_18890 CDS
T03333
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
paef
Paenibacillus sp. FSL R5-0345
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paef03032
]
R50345_18890
03400 DNA repair and recombination proteins [BR:
paef03400
]
R50345_18890
Enzymes [BR:
paef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
R50345_18890
DNA replication proteins [BR:
paef03032
]
Prokaryotic type
DNA Topoisomerases
R50345_18890
DNA repair and recombination proteins [BR:
paef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
R50345_18890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Auto_anti-p27
Zn_ribbon_RPB9
Toprim_3
Toprim_2
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
AIQ36515
LinkDB
All DBs
Position
complement(4157911..4160010)
Genome browser
AA seq
699 aa
AA seq
DB search
MADALVIVESPAKAKTIGKYLGSKYIVKASMGHIRDLPKSQTGVEVENNFNPKYITIRGK
GSILKELKDASKKVKKVYLAADPDREGEAIAWHLAHALNLDQTQECRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIIMDREN
EISAFVPTEYWSITAKLGIRDSVFEAKFHKLNGVKKELNQESDVQEVLEAIKNAAFKVSN
VKEKERQRHPSAPFTTSSLQQEAARKLGFRAAKTMSVAQQLYEGVELGKEGTVGLITYMR
TDSTRLSVTAQDEAKELITAKYGEKFLPEAPRQYSKKAAGAQEAHEAIRPTSALREPEMV
KEFLSRDQFRLYKLVWERFVSSQMASALLDTLSVDIEAGTATFRAVGSKVSFPGFMKVYV
EGNDDGTTDEDKYLPPLQAGDALNKQEIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELVIEQMEQFFPEILNVEFTANMEGDLDHVEEG
SEDWVKVLSEFYESFEKRLVFAEEEMKEIEIEDEVSDEICEKCGKPLVYKLGRFGKFLAC
SGFPDCRNTKPIIKDIGVTCPKCHEGKVVERRSKKGRVFYGCDQYPGCDFVSWDRPSTKP
CPSCGAWMIEKRNKQGTKLQCTSCDHTEAVLDNEEELAE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgcattagtaattgtcgaatcgcccgcaaaagcgaagacaattggcaaatat
ctaggtagtaagtatattgtgaaggcatctatgggacacatcagagatctaccgaagagc
caaacgggtgtcgaagtggagaataattttaatcctaaatatattactattcgtggtaaa
ggttctatattgaaggaattgaaagacgccagtaaaaaagtgaaaaaagtatatctcgca
gctgaccctgaccgcgaaggggaagcgatcgcctggcacttggcgcatgcactaaatttg
gatcaaacacaggaatgtcgagttgtatttaatgagatcaccaaacaagcggtgaaggat
gcttttaagacgccacgcaagataaacatggatcttgtgaatgcgcagcaagcaagacgt
atactggatcggctggtaggttacaagattagccccctattatggaagaaagtcaaaaaa
gggttatcggctggacgtgttcaatcagtagctgtaaagatcataatggatcgtgagaat
gaaatctccgcttttgtgcctactgaatattggagcattacggcaaagctagggattcga
gattccgtctttgaagctaagtttcataagctgaacggtgtgaagaaagaacttaatcaa
gagagcgatgttcaagaggtccttgaggcaatcaagaacgcagcttttaaggtgagtaat
gtgaaagagaaggaaagacaacggcatccttcggctccttttacaacaagttcccttcaa
caagaagccgcacgtaagcttggattccgagcagctaagacaatgtctgttgcccagcaa
ctatacgaaggtgtggaactaggcaaagagggaaccgtaggtttgatcacttatatgcgt
acggactcgactcgcttatctgtcacagcacaggatgaagctaaagagctgattactgct
aaatatggtgaaaagttcttaccagaggcgccgcgccagtattcaaagaaagcagctgga
gcccaagaagcgcatgaagcgattcgaccaacttcagcacttcgtgaacctgagatggtt
aaagagttcttgagccgcgatcaattccgtctttacaagctggtttgggagcggttcgta
tccagtcaaatggcttcagctcttcttgatacactctcagttgatatagaagcgggtacg
gcaacattcagagccgtaggttcgaaggtttcattcccagggttcatgaaggtttatgtg
gaaggcaacgatgatgggactacagatgaagataagtatttaccgcctcttcaagcggga
gatgctttaaataagcaagagatcgagccgaagcagcattttacacagccgccgccgcgt
tatacagaagcaaggcttgtaaagactcttgaggaattaggaataggacgcccaagtacg
tatgcaccaacacttgaaactattcagaagcgtggttatgtagctattgaagagaaaaaa
ttcatgcctacagagcttggagaactagtcatcgagcagatggaacaattttttccggaa
atattgaacgtagagtttacggcgaatatggaaggggatcttgaccatgtggaagaagga
tcagaagattgggtaaaggttctttccgaattctatgagtctttcgagaagcgcttagtg
tttgccgaagaagagatgaaagaaattgagattgaagatgaagtctctgatgagatctgc
gagaaatgtggtaaaccactagtatataaattagggcgtttcgggaaatttctagcatgc
tctggctttccagattgccggaatacgaagccgatcatcaaagatatcggtgtaacttgt
cctaagtgtcatgaaggtaaagttgtagagcgtcgtagcaaaaaaggacgtgtcttctat
ggctgcgatcaatatcccggctgtgatttcgtctcttgggatagaccttccactaagcca
tgtccatcttgcggggcttggatgattgagaaacgcaataagcaaggcaccaagctgcaa
tgtacgtcttgtgatcatacagaggcagttttagacaacgaagaagagttagcagaataa
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