Paenibacillus sp. FSL R5-0345: R50345_29045
Help
Entry
R50345_29045 CDS
T03333
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50345_29045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paef03019
]
R50345_29045
03009 Ribosome biogenesis [BR:
paef03009
]
R50345_29045
Enzymes [BR:
paef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R50345_29045
Messenger RNA biogenesis [BR:
paef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R50345_29045
Ribosome biogenesis [BR:
paef03009
]
Prokaryotic type
rRNA helicases
R50345_29045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIQ38297
LinkDB
All DBs
Position
complement(6394849..6396651)
Genome browser
AA seq
600 aa
AA seq
DB search
MPGFKELGVSELLCTLLQGQGIVKPTPVQQEAIPPLVQGLDVIARAKTGTGKTLAFLLPI
MDKIHTERAYPQALIMAPTRELALQITEEARKLARHTDIKILAVYGGQDVEKQLRKLEGG
RHLIIGTPGRLLDHMRRETLDLSGVKMLVLDEADQMLHMGFLEDVETIITAVPYRRQTML
FSATMPDPIKRLAANYMKEPLDIIIKSGSPIPLDNIKQQVVEVSDRNKEEALIALIERDR
PYLAIIFCRTKRRVSKLNEALQAAGYDCDELHGDLSQGKREGVMKRFRDAKLQLLVATDV
AARGLDVEGITHIFNYDMPLDVDSYIHRIGRTGRAGGKGLAITFTSPREQDGLDMIEHGI
SQRLDRRRYDKDEFGVGEFVAVQGGGRHGGRQSGGAEAARTGRGPKTGGSGRGGAPRGEG
GARQGGRGRGKEAGGWGAPAEGRRGGRSDAAAGKRGGSGYDAAAPKGGGKAAGVVRVGGG
YGAFASRGDAPASGNAAAPSAGSRGANRKGGPSTGYSENVARGADGGAYAGGTPRGGLGS
GYGAGPSRGGGKGGKGSKGGYSSAKGGAGKGGRNSGNAGSSRGGRGSSGGFKSGGRGTSR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
ttgccgggatttaaagaattaggagtttcagaattactgtgtacattgcttcaaggtcaa
ggcatcgtaaagcctacgccagtgcaacaggaagcaataccgccattggtgcagggtctg
gatgtaattgcaagagcgaagacaggtacagggaagacattggctttcttgctgccaatt
atggacaagatccacacggagcgagcttatccgcaggcgctaattatggctccaacacgt
gagttggctttgcagattacagaagaggcacgtaagctggcacgtcatacggatatcaaa
atcttggccgtttacggtggtcaggatgttgagaagcagctgcgtaagctggaaggcgga
agacatcttattatcggtacaccgggcagactgctagatcatatgcgccgcgagacgctc
gatcttagtggtgttaagatgctcgttctggacgaagcggatcaaatgctgcatatggga
ttcttggaggatgtagagaccattattacggctgttccttatcgtcgtcaaacgatgctg
ttctctgcgacgatgccagatccgattaaacgcctcgcagctaattacatgaaagagcct
ctggatatcattattaagagtggttctccgattccgctggataatatcaaacagcaagtc
gtggaagtctcggatcgcaataaagaagaggcacttatagctttgattgaacgagatcgt
ccttacttggctattattttctgccggaccaaacgtcgggtgtccaagctgaacgaagca
cttcaagcagccggttatgattgtgatgaactgcacggcgatttgtctcaaggtaaacgt
gaaggtgtaatgaagagattccgtgatgcgaagctgcagcttcttgtagccacagatgta
gcggctcgggggctggatgtcgaaggtatcacgcatatctttaactatgatatgccactt
gatgtggacagctatatccaccggataggtcggacaggccgtgccggaggtaaagggctt
gcaattacgttcacttctccgcgtgagcaagatggactagacatgatcgagcacggcatt
tcgcagcgcctggatcgtcgccgttacgacaaggatgaattcggcgttggcgaattcgtt
gcagtacaaggcggcggacgccacggcggtcgccaaagcggcggcgctgaggcagcgcgc
acgggccgcggaccgaagaccggcggctctggccgcggcggtgctccgcgcggcgaaggc
ggagcgcggcaaggtggccgcggccgcggtaaggaagcaggcggctggggtgcgcctgca
gaaggtcgccgcggcggtcgttccgatgcggcggctggcaagcgcggaggcagcggctat
gacgctgccgcacctaagggcggcggcaaggctgccggcgtagtgagagtaggcggcggc
tacggcgccttcgcctccagaggcgatgcgccagctagcggtaacgcagcagcgcctagc
gccggttcgcgcggtgcgaaccgtaagggcggaccaagcacaggctacagcgagaacgta
gccagaggcgcagacggcggtgcctacgctggcggcacaccacgaggcggcttaggcagc
ggctacggtgcaggcccgtctagaggcggcggtaaaggcggtaaaggtagcaaaggcggc
tacagcagtgccaaaggtggcgctggtaaaggcgggcgcaacagcggaaacgcaggttcc
tcacgcggtggacgtggcagctccggcggctttaaaagcggcggcagaggcacatccaga
taa
DBGET
integrated database retrieval system
