Paenibacillus sp. FSL R5-0345: R50345_29175
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Entry
R50345_29175 CDS
T03333
Name
(GenBank) ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03022
Basal transcription factors
paef03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
R50345_29175
09124 Replication and repair
03420 Nucleotide excision repair
R50345_29175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paef03021
]
R50345_29175
03036 Chromosome and associated proteins [BR:
paef03036
]
R50345_29175
03400 DNA repair and recombination proteins [BR:
paef03400
]
R50345_29175
Enzymes [BR:
paef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
R50345_29175
Transcription machinery [BR:
paef03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
R50345_29175
Chromosome and associated proteins [BR:
paef03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
R50345_29175
DNA repair and recombination proteins [BR:
paef03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
R50345_29175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
DEAD
PPE-PPW
Motif
Other DBs
NCBI-ProteinID:
AIQ38322
LinkDB
All DBs
Position
complement(6424228..6426540)
Genome browser
AA seq
770 aa
AA seq
DB search
MDHTITLSVRTLVEYVFRSGSIESGFHGTASMVEGTRIHQKIQKQYKEGDRKEVYLRTEI
PYGSLLYIVDGRCDGLLISEDGSLTVEEIKSTSGLLDMLDEGHEVHWAQALMYAYMVSLE
QEHSSIQVKLTYVHRATDEQKSLYRTLSLEELTSFANETVARYAPYAEMMVRHDTKKEQS
LRELSFPFPSYRKGQRHFAGAVYKSIVEKVSLFAQAPTGIGKTMSTLFPVLKAMGEGQAK
GLFYLTAKTVTRFAAQEAISLLLKQGLQLHVITLTAKEKACFREEGICGKDSCPYSDGYY
DRINDAVMDLLEHETLMSKDTIAMYAHKHKVCPFEFSLDAAYACDAVICDYNYIYDPRIS
LKRLTEERKRETVLLVDEAHNLVDRGREMFSASLLKAPFLELQRQYKGVNGNLSAAAKSV
NAFFISLRKICNDEGQGQWAAFPEELPALLETFSLEAEQELIHPSTSIVPLNGEAEGENV
LLDTYFSVQGMLRTFKTYDERYITYAEVRRGDVYLKLFNLDPSHLLRQMSKSFRSQILFS
ATLSPLSYYRDMIGAVEEDYSLTVSSPFQKEQWEVTVLPVSTRYHDREASLLPLTRALNQ
MVSKKGNYLVFFPSYLYLQNVYQAFTENYPEIRTLIQDTGMSEQARESFLVSFRPDNDET
LLGFAVLGGIFSEGVDLPGDRLNGVMVVGVGLPQLGLERNLLRQYFNGKGKNGFDYAYVY
PGMCKVLQAGGRLIRSETDTGIIVLADDRFLQSPYMHLLPEEWRDYLIRS
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggatcatacaatcactctatccgttagaactctcgttgagtatgtcttccgcagcggt
agtattgagtctggatttcatggcactgcctctatggttgaaggtacacgaattcatcag
aagattcaaaagcaatataaagaaggcgaccgcaaggaggtctatctgagaacagaaatc
ccttatggtagcttactctatatagtagatgggcgctgtgatggtttgcttatttcggag
gatgggagccttacggtagaagaaattaaatcaacctccggactgctggatatgctggac
gaaggacatgaggtacattgggcacaggcactgatgtacgcatatatggtgtcgctggag
caggagcattcttctatacaggtaaagcttacctatgtccaccgggcaacggatgagcaa
aaaagcttgtaccgaacgttgtctttagaagaattgacctcattcgctaatgagactgtg
gccagatatgctccatatgccgagatgatggttcgtcatgatacaaaaaaggagcagagc
cttcgtgagttgagttttccgtttccttcctatcgaaagggtcaacggcattttgccgga
gcggtgtacaaatccattgtggaaaaggtcagtctgttcgctcaggcgcccactggtatc
ggaaaaactatgtcgaccttattccctgtcctaaaagcaatgggcgaaggacaagctaaa
ggattgttctatttaacggctaagacggttacccgttttgccgcgcaggaagctatatcg
ctgctgctgaagcagggacttcagctgcatgtcatcacacttaccgctaaagagaaggcc
tgtttccgagaggaagggatttgcggtaaggattcctgtccgtattcggatggctattat
gatcggattaacgatgcggtaatggatttgctagagcatgagacattgatgagcaaagac
accatagcaatgtatgctcacaaacataaagtgtgcccgtttgagttctcgttggatgct
gcctatgcctgcgatgcggtgatctgtgattacaattatatatatgatcctcggatcagc
ctgaaacggctaacggaagaaagaaagagagaaacggtgcttctagtagatgaagcacat
aatctggtagaccgaggaagggagatgttctccgcctctttgctgaaggcgccttttcta
gagctccagcgtcagtacaagggtgttaacggaaatttgagtgctgcagctaaatcggtg
aatgcctttttcatctcccttcgtaaaatatgtaatgatgaggggcagggacaatgggct
gcgttcccggaggagttacccgctttgcttgagacgttctccttggaagcggaacaggag
cttatacatccaagcaccagcattgttcccctgaatggggaagctgaaggtgagaatgtt
ctcctggatacgtatttttcagtgcaagggatgcttcgtacctttaaaacttacgatgaa
cgctacataacctatgctgaggtacggcgcggtgatgtgtatctcaagctattcaatttg
gacccttcgcatttgctccggcaaatgtccaagagctttcgaagtcagattctgttctct
gctacgctctctccattatcgtactatcgggatatgattggtgcagtggaggaagattat
agtttaaccgtctcatctccttttcagaaggagcagtgggaggtgactgtgctgcccgtc
tcgacacgttatcatgaccgggaagcgtccctccttccgttgactcgggcgttgaaccaa
atggtttctaagaagggcaattatctggtgttttttccatcgtacctttatttgcaaaat
gtatatcaagcctttacggagaattaccctgaaatacggactttgatacaggacacgggc
atgagtgagcaggctagagaaagttttttagtttcatttcgtccagataatgacgagaca
ctgttaggatttgctgtactaggagggattttttcagaaggtgtggatctgccgggagac
cgacttaacggggtaatggttgtcggtgtgggtctgccacagctaggtcttgagcgtaat
ctcctgcgtcagtattttaatggcaaaggtaagaatggctttgattatgcctatgtctac
ccaggaatgtgcaaggtattgcaagccggaggcaggttgattcgcagcgagacggacaca
ggcattattgtgcttgcagatgatcgctttttgcagagtccttatatgcatttgcttccc
gaggaatggagagattatcttatccgctcataa
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