Paenibacillus sp. FSL R5-0345: R50345_30250
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Entry
R50345_30250 CDS
T03333
Name
(GenBank) helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03420
Nucleotide excision repair
paef03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R50345_30250
03430 Mismatch repair
R50345_30250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paef03400
]
R50345_30250
Enzymes [BR:
paef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R50345_30250
DNA repair and recombination proteins [BR:
paef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R50345_30250
MMR (mismatch excision repair)
Other MMR factors
R50345_30250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
UvrD_C
AAA_19
Viral_helicase1
SLFN-g3_helicase
DEAD
NACHT
AAA_16
nSTAND3
PhoH
AAA_30
ResIII
RhoGAP_pG1_pG2
WD40_alt
Motif
Other DBs
NCBI-ProteinID:
AIQ38524
LinkDB
All DBs
Position
complement(6670523..6672949)
Genome browser
AA seq
808 aa
AA seq
DB search
MVDVNDWQQEQERLDLVTEKLRLRIAELEPEVTGLRDQVVDIRKRFWEEVTVNTSTDEDF
EETFYSIKQQEALLSERERSHRQRVQRFNNMKRLLPSPYFGRMDFHEDGLSSSEKIYIGV
ASFVDADGVDFLVYDWRTPIASMYYDHSPGRSTYETPGGQITGEMMLKRQYQIRYGQLQN
VFDTSLTIGDELLQQVLGKGADSQMKSIVATIQKEQNAIIRNDKSRMLIVQGAAGSGKTS
AALQRVAYLLYKHRDRLKADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLAYWL
GSTVHLEDPFEQIEYVLTSSQSSQGYEARLTGMQYKASEAFLHALQSYAQWLGKEGMLFH
SIRFRDRDLITAEQMKSQFYSYDSSIRLANRVALLREWLLRELTKLERQEMEAPWVQDEV
DYLDNDQYAEAYSEVLKKYRREEAVFDFTEQYLEIYGDFRIQKDGEENVFDFSSQEEELL
RRMIVKEHFKPLRRDAKRLKFINTIGLYDQLFSDAAIYQEMTGETEVPDQWSEICMQTKE
KLSHTELFYEDETPFLYLKELIEGSRTNTMVRHLFIDEGQDYSPFQFAFLKQLFPRASMT
ILGDFSQAIFPQATNLQEVNSPLIRLYGEEETNLFRLIRSYRSTREIVEFTKALLPNEEI
VPFDRGGKKPHLVKASNDVERAVRIKEDLAALMAEGLDSIAVITKTAAESREAYEALAAQ
GGENLRLVTKETLTFEKGTLVIPAYLAKGVEFDAVLIYDASTQTYHRESERKLFYTACTR
AMHRLLLYTTSDWSHFIQALDTSLYEVV
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggtagacgtaaacgattggcagcaagaacaagaacggcttgatttggttacggaaaag
ctgcgattaagaatcgcagaactagaacccgaagtaactgggttacgtgatcaggtggtg
gacattcgcaagcggttttgggaagaagtcacggtcaatacgagcacagacgaagatttt
gaagagaccttctacagtataaagcagcaagaagcgttgttgtccgagcgggaacgcagt
caccggcaacgggtccagcgttttaataatatgaaacggcttctgccctctccctatttt
gggcgaatggattttcatgaagacggcctgagctccagtgagaaaatttatatcggagtg
gcttctttcgtcgatgcagacggtgtggactttctggtgtatgactggcgaacacctatt
gcaagcatgtactatgaccattctccggggagatccacttatgaaacgccgggtggacag
attacaggtgagatgatgctgaagcggcaatatcagatccgttacggccagctccagaac
gtgttcgatacgagcttaacgatcggggacgaattgcttcagcaggtgcttggcaagggc
gcggattcacaaatgaagagcattgtggcgaccattcagaaggaacagaacgccatcatc
cgcaatgacaaaagtcgtatgctcattgtacagggggcggctggcagcggaaagacgtcc
gcagcgttgcaacgggtagcctatttattatacaaacaccgcgataggctcaaggcggat
cagatcgttcttttttcgccaaatccgatgtttaacagttatgtatcgacggttctgccc
gagcttggcgaggagaatatgcagcaaacgacgtttcaggaataccttgcttattggctt
ggatccacggttcatctagaggaccccttcgagcagattgaatatgtactgacatcatca
caatcctcgcagggatatgaagcacggctaacaggaatgcaatataaggcttctgaagcc
tttctgcatgctctccaaagctacgcacaatggctagggaaagagggaatgctgttccac
agtattcgtttccgggaccgcgatttgattactgcggagcaaatgaaatcgcaattttac
agctacgacagctctatccgattggcgaatcgcgtcgctttactacgtgaatggctgctg
cgcgagttgactaagctagaacgtcaggaaatggaggcaccctgggttcaagatgaggtc
gattacctcgacaacgatcaatatgccgaagcgtacagtgaggtgcttaagaagtaccgg
cgagaagaggctgtcttcgattttacggagcagtatcttgaaatctatggcgattttcgt
attcagaaggacggggaagagaatgtttttgactttagttcgcaggaagaagaactgctg
cgtcgaatgatcgtgaaggagcacttcaaaccgctgagacgggatgccaaacggttgaag
ttcataaatacgattggattatacgatcagttgtttagtgatgctgctatctatcaggaa
atgacgggtgagaccgaagtacctgatcaatggtcagaaatctgtatgcaaacgaaggaa
aagttgagccatactgagctgttttatgaggatgagaccccattcctatatttaaaagag
cttatcgagggttctcgcacgaatacaatggtgcggcatttatttattgacgaggggcag
gactattcgccgttccaattcgcgtttctcaaacaattgtttccccgcgccagcatgaca
atactcggcgatttcagtcaagcgattttcccgcaagcgacgaatctgcaagaggtgaat
tctcctttgatccggctttatggtgaagaggaaacgaacctatttcgtctaatccgaagc
tatcgctccactcgcgagattgtggagtttacgaaggcgctgctacctaatgaagagatc
gtgccttttgataggggcggcaagaagccgcacctagtgaaggctagcaatgacgtagag
cgggcggtccgaataaaagaggatcttgcggcgcttatggccgaaggtctcgactccatt
gccgttattactaagactgctgcggaaagtcgcgaagcctatgaagcattggctgcacag
gggggcgagaatctgcgacttgttacgaaggagacgctcacctttgagaagggaacgttg
gttattcctgcgtatcttgctaagggggtagaattcgacgctgtgctaatctacgatgct
tccacgcagacgtatcatcgggagagcgaacgtaaactcttttatacggcttgtactcgc
gcgatgcatcgccttctgctgtacacgacaagcgattggtcacactttattcaagccttg
gatacctctttgtatgaggtagtgtaa
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