Pseudomonas aeruginosa YL84: AI22_00985
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Entry
AI22_00985 CDS
T03035
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
paeg
Pseudomonas aeruginosa YL84
Pathway
paeg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
paeg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AI22_00985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paeg03021
]
AI22_00985
Transcription machinery [BR:
paeg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AI22_00985
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
AHH47450
LinkDB
All DBs
Position
198856..200709
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AA seq
617 aa
AA seq
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MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFET
APDADALLLAEADTDEAAAEEAAAALAAVESDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAQFPGTVDSILADYNRIVAEGGRLSDVLSGYIDPDDGSLPAEEV
EPVNLKDDSADSKEKDDEEEESDDSSDSDDEGDGGPDPEEARLRFTAVSEQLDKAKKALK
KHGRGSKQATAELTGLAELFMPIKLVPKQFDALVARVRSALEGVRAQERAIMQLCVRDAR
MPRADFLRLFPNHETDEKWVDSVLKSKPKYAEAIERLRDDILRNQQKLAALESEVELTVA
EIKEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMAT
SESLKESTREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEHLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatctcgtctgaaagagttgatcgcccgaggccgtgag
cagggatacctgacttacgcggaggtcaacgaccacctgccggaggatatttccgatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagaca
gccccggatgcggatgccctgttgctggccgaggcggataccgacgaagccgcagcggaa
gaagccgcagcggccctggccgcggtggaaagcgacatcggtcgcaccaccgacccggtg
cgcatgtacatgcgtgaaatgggtaccgtggaactgctgacccgcgaaggcgagatcgaa
atcgccaagcgcatcgaggaaggcatccgcgaagtgatgagcgccatcgcccagttcccg
ggcacggtggacagcatcctggccgactacaatcgcatcgtcgccgaaggcggtcgcctc
tccgacgtcctcagcggctatatcgatcccgatgacggcagcctgcccgccgaagaggtg
gagccggtcaacctgaaggacgattccgccgactcgaaagagaaggacgacgaggaagaa
gaaagcgacgacagcagcgacagcgacgacgaaggcgacggcggtccggatccggaagaa
gcccgcctgcgtttcaccgcggtctccgagcagctcgacaaggccaagaaggccctgaag
aagcacggtcgcggcagcaagcaggccaccgccgaactcaccggcctggccgagctgttc
atgccgatcaagctggtccccaagcagttcgacgccctggtcgcccgcgtgcgctccgcc
ctggaaggcgtgcgcgcccaggaacgcgccatcatgcagctctgcgtgcgtgacgcgcgc
atgccgcgtgccgacttcctgcgcctgttcccgaaccacgagaccgacgagaagtgggtc
gacagcgtcctgaagagcaagccgaagtacgccgaggccatcgagcgcctgcgcgacgac
atcctgcgcaaccagcagaagctggcggccctggaaagcgaggtcgagctgaccgtcgcc
gagatcaaggaaatcaaccgcgcgatgtcgatcggcgaagccaaggctcgccgggcgaag
aaggaaatggtcgaggccaacctgcgcctggtgatttccatcgccaagaagtacaccaac
cgcggcctgcaattcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtg
gacaagttcgaataccgtcgcggctacaagttctccacctacgccacctggtggattcgc
caggcgatcacccgttcaatcgccgaccaggcacgcaccatccgcatcccggtgcacatg
atcgagacgatcaacaagctcaaccgcatctcccgccagatgctccaggaaatgggtcgc
gagcccaccccggaagagcttggcgagcgcatggacatgcctgaggacaagatccgcaag
gtactgaagatcgccaaagagccgatctccatggaaaccccgatcggtgacgacgaagat
tcgcacctgggcgatttcatcgaggactccaccatgcagtcgccgatcgagatggcgacc
agcgagagcctcaaggaatccacccgcgaagtcctcgccggcctcactgcccgggaagcc
aaggtgctgcgcatgcgcttcggcatcgacatgaacaccgaccacaccctcgaggaagtc
ggcaagcagttcgatgtgacccgcgagcggatccgccagatcgaagccaaggcgctgcgc
aagctgcgccatccgtcgcgaagcgagcacctgcgctccttcctcgacgagtga
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