Pseudomonas aeruginosa YL84: AI22_08230
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Entry
AI22_08230 CDS
T03035
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
paeg
Pseudomonas aeruginosa YL84
Pathway
paeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AI22_08230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeg03019
]
AI22_08230
03016 Transfer RNA biogenesis [BR:
paeg03016
]
AI22_08230
Enzymes [BR:
paeg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AI22_08230
Messenger RNA biogenesis [BR:
paeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AI22_08230
Transfer RNA biogenesis [BR:
paeg03016
]
Prokaryotic type
tRNA degradation factors
AI22_08230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_2
KH_2
Motif
Other DBs
NCBI-ProteinID:
AHH48864
LinkDB
All DBs
Position
1778132..1780237
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVTKQFQFGQSTVTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSV
HYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTN
KKSDPDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVA
GTEDAVLMVESEADELTEDQMLGAVLFAHDEFQAVIRAVKELAAEAGKPAWDWKAPAENT
VLVNAIKAELGEAISQAYTITIKQDRYNRLGELRDQAVALFAGEEEGKFPASEVKDVFGL
LEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAMLPTQD
EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ
VIAKPRAELSENAPTMLQMKIDSDKIRDVIGKGGATIRGICEETKASIDIEDDGSVKIYG
ETKEAAEAAKLRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDKRI
DKVTDVLQEGQEVKVLVLDVDNRGRIKLSIKDVAAAEASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaaccaagcaattccagttcggtcagtcgaccgtcactctcgagaccggc
cgtatcgctcgccaggccaccggcgccgtactggtcaccatggacgacgtcagcgtgctg
gtcaccgtggtcggcgccaagtcgccggccgaaggccgcgacttcttcccgctgtccgtg
cactaccaggaaaagacctacgccgcaggccgtatccccggtggtttcttcaagcgtgaa
ggacgtccttccgagaaggaaaccctgacctcgcgcctgatcgaccgtccgatccgtccg
ctgttccccgaaggtttcatgaatgaagtgcaggtcgtctgcaccgtcgtttccaccaac
aagaagtccgatccggacatcgccgcgatgatcggcacctccgccgccctggcgatctcc
ggcattccgttcgccggcccgatcggcgccgcccgcgtcggtttccacccggaaatcggc
tacatcctcaaccccacctacgagcaactgcagagttccagcctcgacatggtcgtggcc
ggtaccgaagacgccgtgctgatggtggagtccgaggccgacgaactgaccgaagaccag
atgctcggtgccgtgctgttcgcccacgacgagttccaggcggtgatccgtgccgtcaag
gagctggccgccgaagctggcaagccggcctgggactggaaagccccggcggaaaacacc
gtgctggtcaacgccatcaaggcagagctgggcgaagcgatctcccaggcctataccatc
accatcaagcaggaccgctacaaccgtctgggcgagctgcgcgaccaggccgtggccctg
ttcgccggcgaggaagagggcaagttcccggcttccgaggtcaaggacgtattcggcctg
ctggaataccgcaccgttcgcgagaacatcgtcaacggcaagccgcgtatcgacggtcgt
gacacccgtaccgtgcgtccgctgcgcatcgaagtcggcgtgctcggcaagacccacggt
tccgcgctgttcacccgtggcgaaacccaggccctggtcgtcgcgaccctcggcaccgcg
cgtgatgcccaactgctggataccctggaaggcgagcgcaaggacgccttcatgctgcac
tacaacttcccgccgttctcggtaggcgagtgcggccgcatgggcagcccgggtcgtcgt
gaaatcggccatggccgtctggcccgtcgtggcgtcgccgccatgctgccgacccaggac
gagttcccctacaccattcgcgtggtttccgagatcaccgagtccaacggttccagctcg
atggcctccgtgtgcggcgcctccctggcgctgatggatgccggtgtgccggtcaaggcg
ccggtcgccggtatcgccatgggcctggtcaaggaaggcgagaagttcgccgtcctgacc
gacatcctcggtgacgaagaccacctgggcgacatggacttcaaggttgccggtaccgac
aagggcgtcaccgccctgcagatggacatcaagatcaacggtatcaccgaagagatcatg
gagatcgccctgggccaggccctggaagctcgcctgaacatcctcggccagatgaaccag
gtcatcgccaagcctcgcgccgagctgtccgagaacgccccgaccatgctgcagatgaag
atcgactcggacaagatccgcgacgtcatcggcaagggcggcgcgaccatccgtggtatc
tgcgaagagaccaaggcctcgatcgacatcgaggacgatggcagcgtgaagatctacggc
gaaaccaaggaagccgccgaggccgccaagctgcgcgtcctggcgatcaccgcggaagcc
gagatcggcaagatctacgtcggcaaggtggagcgcatcgtcgacttcggtgccttcgtc
aacatcctgccgggcaaggacggcctggtgcacatctcgcagatcagcgacaagcgcatc
gacaaggtcaccgacgtgctgcaggaaggccaggaagtgaaggttctggtgctcgacgtg
gacaaccgtggccgcatcaagctgtcgatcaaggacgtggctgccgccgaagcttccggc
gtgtaa
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