Pseudomonas aeruginosa YL84: AI22_23355
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Entry
AI22_23355 CDS
T03035
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paeg
Pseudomonas aeruginosa YL84
Pathway
paeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AI22_23355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeg03019
]
AI22_23355
03009 Ribosome biogenesis [BR:
paeg03009
]
AI22_23355
Enzymes [BR:
paeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AI22_23355
Messenger RNA biogenesis [BR:
paeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AI22_23355
Ribosome biogenesis [BR:
paeg03009
]
Prokaryotic type
rRNA processing factors
AI22_23355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHH51786
LinkDB
All DBs
Position
5051958..5055131
Genome browser
AA seq
1057 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSTEELQW
DLDYLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALN
FIRQVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHF
EVQRLRDDSPELVAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEA
PVEPAKPMPEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNR
RRDGRDGNRRDEERKPREERAERQPREERAERPNREERSERRREERAERPAREERQPREG
REERAERTPREERQPREGREGREERSERRREERAERPAREERQPREGREERAERPTREER
QPREDRQARDAAALEAEALPNDESLEQDEQDDTDGERPRRRSRGQRRRSNRRERQREVSG
EVEGSEATDNAAAPLNTVAAAAAAGIAVASEAVEANVEQAPATTSEAASETTASDETDAS
TSEAVETQGADSEANTGETADIEAPVTVSVVRDEADQSTLLVAQATEEAPFASESVESRE
DAESAVQPATEAAEEVAAPVPVEAAAPSEPATTEEPTPAIAAVPANATGRALNDPREKRR
LQREAERLAREAVAAAEAAAQAAPAVEEVPAVASEEASAQEEPAAPQAEEIAQADVPSQA
DEAQEAVQAEPEASGEDATDTEHAKKTEESETSRPHA
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcgactcaacccgaggagttgcgtgttgcactggtcgac
ggccaacgcctgttcgacctcgacatcgagtcgggcgcccgcgagcagaagaaggccaac
atctacaaaggccgtatcactcgcgtcgaacccagcctcgaagccgccttcgtcgacttc
ggcgccgaacgccacggcttcctccccctcaaagaaatctcccgcgaatacttcaagaaa
tcccccgaaggccggatcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgcggcaacaagggcgccgccctgaccaccttcatcagcctg
gccggccgttacctggtgctgatgccgaacaacccgcgcgccggcggcatctcccgccgt
atcgaaggcgaagagcgcaacgagctgcgcgaggccctgaacggcctcaacgcaccggcc
gacatgggcctgatcgtgcgcaccgccggcctcggccgcagcaccgaggaactgcagtgg
gacctcgactacctgctgcaactgtggagcgcgatcaaggaagcgtccggcgaacgtggc
gcgcccttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgaac
ttcatccgccaggtgatgccgcagtacgccagcaaggtgaagctgtaccaggacagcgtt
ccgctgttcaatcgcttccagatcgagagccagatcgagaccgctttccagcgcgaagtg
aagctgccgtccggcggctccatcgtcatcgacccgaccgaggccctggtttccatcgac
atcaactcggcgcgcgccaccaagggcggcgacatcgaggaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagagcgtgtc
cgcgaagccctcgaggccgaccgcgcgcgcgtccaggtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgccagcgcctgcgtccgtccctcggcgagaccagcggcatcgtc
tgcccgcgctgcaacggccagggcatcatccgcgacgtcgagtcgctgtcgctggccatc
ctgcgcctgattgaggaagaagccctgaaggaccgcaccgcggaagtccgcgcccgcgtg
cccttccaggtcgccgccttcctgctcaacgagaagcgcaacgccatcaccaagatcgaa
ctgcgtacccgcgcgcgcatcttcatcctgccggacgatcatctggaaaccccgcatttc
gaagtccagcgtctgcgcgatgacagccccgaactggttgccggccagaccagctacgaa
atggccaccgtcgagcacgaagaagcccagccggtcagctcgacccgcaccctggtccgc
caggaagcagcagtcaagaccgtcgctccccagcagcccgcaccgcaacacaccgaagca
ccggtcgagccggccaagccgatgcccgagccgagcctgttccagggcctggtgaagtcc
ctggtcggcctgttcgcaggcaaggatcaacctgccgccaagcctgctgaaaccagcaag
ccggctgccgagcgccaaacccgccaggacgagcgtcgcaacggccgccagcagaaccgc
cgccgcgatggccgcgatggcaatcgccgcgacgaagagcgcaagccccgcgaggaacgc
gcagagcgccaaccgcgcgaagagcgcgccgaacgcccgaaccgcgaagagcgcagcgaa
cgtcgccgcgaagagcgcgccgagcgcccggctcgcgaggagcgccagccgcgcgaaggc
cgtgaagagcgcgccgagcggacaccccgcgaagagcgccagccgcgcgaaggccgcgaa
ggtcgcgaggaacgcagcgaacgccgccgcgaagagcgcgccgaacgcccggctcgcgaa
gagcgccaaccccgcgaaggccgtgaagaacgcgccgagcgcccgacccgcgaagagcgc
cagccgcgcgaggatcgccaggctcgcgacgccgcggccctggaagccgaggcgctgccg
aacgacgagagcctggagcaggacgagcaggacgataccgatggcgagcgcccgcgccgc
cgctcccgcggccagcgtcgtcgcagcaaccgccgcgaacgccagcgcgaggtcagtggc
gaggtggaaggcagcgaggcgaccgataacgccgccgcgccgctgaacacagtcgcagcc
gccgccgctgccggtatcgctgtcgccagcgaagccgtagaagcaaacgtggagcaagcc
ccggccactaccagcgaggctgccagcgaaaccacggcaagcgatgagaccgacgcgtcg
accagcgaagccgtcgaaacccagggcgcggacagcgaggccaataccggcgaaaccgcc
gacatcgaagcgccggtgaccgtcagcgtggtccgggacgaagccgaccagagcaccctg
ctggtcgcgcaagccactgaagaagctcccttcgccagcgaaagcgtggaaagccgcgaa
gacgccgagagcgccgtgcaaccggcaacggaagcggccgaagaagttgccgccccggtg
cccgtcgaagcagcagcccctagcgagcccgcaaccaccgaggagccgaccccggccatc
gcggcggtgccggccaacgcgaccggccgtgccctcaacgacccacgggaaaaacgtcgc
ctgcaacgcgaagccgagcgtctggcacgcgaagccgtagcagcagccgaagcggcagct
caggccgctcccgccgtcgaggaggtcccggctgtagcgagcgaggaagcgtcggcccag
gaggaacctgctgcaccccaggctgaagaaatcgcccaggccgacgttccgtcccaggcg
gacgaagcccaggaagcggtacaggccgagcctgaagcttccggcgaagacgccaccgac
acggagcacgcgaaaaagaccgaggaaagcgaaacctcgcgcccgcatgcctga
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integrated database retrieval system
