Pseudomonas aeruginosa YL84: AI22_23490
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Entry
AI22_23490 CDS
T03035
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paeg
Pseudomonas aeruginosa YL84
Pathway
paeg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AI22_23490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paeg03400
]
AI22_23490
Enzymes [BR:
paeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AI22_23490
DNA repair and recombination proteins [BR:
paeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AI22_23490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
AAA_30
DUF7267
Motif
Other DBs
NCBI-ProteinID:
AHH51813
LinkDB
All DBs
Position
5079952..5083398
Genome browser
AA seq
1148 aa
AA seq
DB search
MSVLRLPSLPASAGKQHWGNLPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYQLPQLKHGVLVVPISTALHRLAPT
RFLLGSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSELPF
RIDLFDDEIETLRTFDPETQRSIDKVESIRLLPAREFPLNKEAVTGFRGRFRERFDVDYR
RCPIYQDLASGLTPSGIEYYLPLFFEETATLFDYLPQDTQVFSLPGIEQAAEQFWNDVRS
RYEDRRVDPERPLLPPAEVFLPVEDCFARLKNWPRVVASQEDVEPGVGRERFPALPLPNL
AIEAKAAEPLAALRRFIEEFPGRVLFCAESAGRREVLLELLARLKLRPEEVDGWPAFLAS
QARLAISIAPLDEGLLLDHPALALVAESPLFGQRVMQRRRREKTRDGGDAVIKNLTELRE
GAPVVHIDHGVGRYLGLITLEVDNQQAEFLMLQYAEDAKLYVPVANLHLIARYTGADDAL
APLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFKDPQADYATFSAGFPF
EETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVPTT
LLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQEDVK
FANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATP
PARRLSVRTFVMEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELVPEARIG
IGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL
GDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEVNLRVPALIPEDYLPD
VHARLILYKRIANAPDEEGLRELQVEMIDRFGLLPDPAKNLMRLTLLKLQAEKLGILKVD
AGPQGGRIEFAADTQVDPLVLIKLIQGQPNRYKFEGATLFRFQVPMERPEERFNTLEALF
ERLTPQTT
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgtcttcccagcctgccggccagcgccggcaagcaacactggggcaac
ctccccggtgccgcgctgagcctggctgtcgccgaggccgccagttccgccaagcgcttc
accctgctgctgaccgccgacagccagaatgccgaacgcctggaacaggaactgcggttc
ttcgcccccgacctgccggtattgcatttccccgattgggaaaccctgccctacgacgtc
ttttcaccgcaccaggacatcatttcccagcgcatcgccgccctctaccagttgccgcag
ctcaagcacggcgtgctggtggtgccgatctccaccgccttgcaccgcctggcgccgacc
cgcttcctgctcggcagcagcctggtcctcgacgtcggccagaaactcgacgtcgagcgg
atgcgcctgcgcctggaaggcgccggctaccgctgcgtcgacacggtctacgagcacggc
gagttcgccgtccgcggcgcgctgatcgacctgttcccgatgggcagcgagttgcccttc
cgtatcgacctgttcgacgacgagatcgagaccctgcgcaccttcgacccggagacccag
cgctccatcgacaaggtcgagtcgatccgcctgctgccggcacgcgaattccccctgaac
aaggaagcggtcaccggcttccgcggccgcttccgcgagcgcttcgacgtcgactaccgg
cgctgcccgatctaccaggacctcgccagcggtttgacaccctcgggaatcgagtactac
ctgccgctgttcttcgaggaaaccgcgaccctcttcgactacctgccgcaagacacccag
gtgttctccctgcccggcatcgaacaggccgcggagcagttctggaatgacgtacgcagc
cgctacgaggaccgccgggtcgatccggaacggccattgctgccgccggcggaagtgttc
cttccggtggaagactgcttcgcccggctgaagaactggccacgggtggtcgccagccag
gaggacgtcgagccgggcgtcgggcgcgagcgcttcccggccctgccgctgccgaacctg
gcgatcgaagccaaggccgccgagccgctggccgcgctgcgccggttcatcgaggagttc
cccggccgcgtactgttctgcgccgaatcggccggacgccgggaagtcctgctggagctg
ctggcccgactgaagctgcgccccgaggaagtcgacggctggccggccttcctcgccagc
caggcacgcctggcgatcagcatcgcgccgctggacgagggcctgctgctggaccatccg
gccctcgccctggtcgccgaaagcccgctgttcggccagcgcgtcatgcagcgccggcgc
cgggaaaagacccgcgacggcggcgacgcggtgatcaagaacctcaccgagctgcgcgaa
ggcgcgccggtggtgcacatcgaccatggcgtcggccgctacctgggcctgatcaccctc
gaggtggacaaccagcaggcggaattcctcatgctgcaatacgccgaggacgccaagctc
tacgtgccggtcgccaacctgcacctgatcgcccgctacaccggcgccgacgacgccctg
gcgccgttgcaccggctcggctcggaaacctggcagaaggccaagcgcaaggccgccgag
caggtccgcgacgtcgccgccgagctgctcgacatctacgcccgccgcgccgcccgcgaa
ggcttcgcgttcaaggatccgcaggccgactacgcgaccttctcggccggcttcccgttc
gaggagacgccggaccagcaaagcgccatcgaggcggtggtcgccgatatgctcgcgccc
aggcccatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaagtggcgatg
cgcgcggcgttcgtcgccgtgcatagcggcaagcaggtggcggtgctggtgcccaccacc
ctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtgagc
gtcgaggtgatgagccgcttcaagagcgccaaggaagtcgagaacgctgcgcggctactg
gccgaaggcaagatcgacatcctcatcgggacccacaagctgctccaggaagacgtgaag
ttcgccaacctggggttggtcgtgatcgacgaggaacaccgcttcggggtgcgccagaag
gagcagctcaaggccctgcgcagcgaagtggacatcctcaccctcaccgccacgccgatc
ccgcggaccctgaacatggccgtctccggcatgcgcgacctgtccatcatcgccacgccg
ccggcgcgccgcctgtcggtgcgcaccttcgtcatggagcagcagaacgcggtgatcaag
gaagcgctgctccgcgaactgctgcgcggcggccaggtgtactatctgcacaacgaagtg
aagaccatcgagaagtgcgcccgcgacctagccgaactggtcccggaggcgcgcatcggc
atcggccacggacagatgcacgagcgcgagctggaacaggtgatgagcgacttctaccac
aagcgcttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtgcccagc
gccaacaccatcctcatcgagcgcgccgacaagttcggcctggcccagttgcaccagttg
cgcggccgcgtcggtcgcagccaccaccaggcctacgcctacctgctgacaccgccgcgc
cgtcagatgaccccggacgccgagaaacgcctggaagccatcgccaacgcccaggacctg
ggcgccggcttcgtcctcgccacccacgacctggagatccgcggcgccggcgagttgctc
ggcgacggccagagcgggcagatccaggcggtcggcttcaccctctacatggaaatgctc
gaacgggcggtgaaggccatccgcaagggcgagcaaccgaacctcgagcagccactgggc
ggcgggccggaggtcaacctgcgggtgcctgcgctgatccccgaggattacctgcccgac
gtgcatgcccggctgatcctctacaagcgcatcgccaacgcccctgacgaggaaggtttg
cgcgagttgcaggtggagatgatcgaccgcttcgggctcctgcccgatccggcgaagaac
ctgatgcgcctgacccttctgaaactgcaggcggaaaaacttggaatactcaaggtcgat
gccggaccgcagggcggtcgtatagaattcgccgccgatacccaggtcgacccgctggta
ttgatcaagctgatccagggccagccgaaccgctacaagttcgaaggcgcaaccctgttc
cgcttccaggtgcccatggaacgaccggaagaacgcttcaataccctggaggcgctgttc
gagcgcctgacaccgcaaaccacctaa
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