Pseudomonas aeruginosa YL84: AI22_25260
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Entry
AI22_25260 CDS
T03035
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
paeg
Pseudomonas aeruginosa YL84
Pathway
paeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AI22_25260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeg03019
]
AI22_25260
03400 DNA repair and recombination proteins [BR:
paeg03400
]
AI22_25260
Enzymes [BR:
paeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AI22_25260
Messenger RNA biogenesis [BR:
paeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AI22_25260
DNA repair and recombination proteins [BR:
paeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AI22_25260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
Sigma70_r4_2
HTH_23
GerE
ResIII
HTH_29
Transposase_mut
Motif
Other DBs
NCBI-ProteinID:
AHH52145
LinkDB
All DBs
Position
complement(5466456..5468594)
Genome browser
AA seq
712 aa
AA seq
DB search
MREQALRILKDVFGYDAFRGNQARIIERVAEGGDALVLMPTGGGKSLCFQVPALLREGLT
VVVSPLIALMEDQVATLDELGVPAVALNSTLNPEQQRDIAERLQRGEIKLLYLAPERLVQ
PRMLAFLQRLPVGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPQVPRIALTATADMRT
REEMIQRLHLQNAEQFLSSFDRPNIFYRIVPKEQPRKQLLGFLSERRGDAGIVYCLSRKK
VEEVAEFLGNQGFPALPYHAGLSNELRAHHQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLLLRQMMQSSEGDERHKRVERHK
LEAMLALCEETRCRRQALLAYFDEEMPQPCGHCDNCVDGVETWDATESARQALSAIYRSG
QRYGVGHLVDILLGRETEKIRSLGHQHLAVFGIGKGRGEDEWRTLFRQLVARGLADVDLD
GFGGLRLTEACRPLLRGEVRLELRRDLKPQRAKGSSSGGASAASQLVRSEEREMWEALRA
LRRKLAEEHSVPPYVIFPDATLLEMLRSQPRSLSDMAQVSGVGARKLERYGQAFLDVLTD
SPAAPAAPPQDLRHELASLACAGMTPAQIARQLNCSEKNVYAMLAEAIAGQQVSLEQALD
LPEELLGEIQDAFLEEDGELPPVAALEERFGKRVPSGVLHCVRAALQVELES
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgagcaagccctacgcatcctcaaagacgttttcggttacgacgccttccgtggc
aaccaggcacggatcatcgagcgggtggccgagggtggcgatgcgctggtactgatgccc
accggcggtggcaagtccctgtgtttccaggtcccggcgctgctgcgcgaaggcctgacg
gtggtggtgtcgccgctgatcgcgctgatggaggaccaggtcgccacgctggacgaactc
ggcgtgccggcggtggcgctgaactccaccctcaaccccgagcagcagcgggacatcgcc
gagcgcctgcagcgtggcgagatcaagctgctctacctggcaccggagcggttggtccag
ccgcgcatgctggccttcctgcaacgactgccggtcggcctgttcgccatcgacgaagcg
cactgcgtgtcgcaatggggccatgacttccgtcccgaatacctgcagctcggccagctt
gccgagctgttcccgcaggtgccgcggatcgccctgaccgccaccgcggacatgcgtacc
cgcgaggagatgatccagcgcctgcacctgcagaacgccgagcagttcctctccagcttc
gaccggccgaacatcttctaccgcatcgtgcccaaggagcagccgcgcaagcagttgctc
ggcttcctctccgagcggcgcggcgatgccggcatcgtctactgcctgtcgcggaagaag
gtcgaggaggtcgcggaattcctcggcaaccagggcttccccgcgctgccgtatcacgcc
ggactgtccaacgaactgcgtgcccaccaccagaagcgcttcctcaacgaggaaggcttg
atcatggtggcgaccatcgccttcggcatgggcatcgacaagcccaacgtgcgtttcgtc
gcccacctcgacctgcccaagagcctcgaggcctattaccaggaaaccggccgcgccggc
cgcgatggcctgccggccgacgcctggatggcctacggcctgcaggacgtcctgctgctg
cggcagatgatgcagagttccgagggcgacgagcggcacaagcgcgtcgagcggcacaag
ctggaagccatgctggcgctctgcgaggaaacccgttgccggcgccaggcgctgctggcc
tatttcgacgaggagatgccgcagccctgcgggcattgcgacaactgcgtggacggcgtg
gaaacctgggatgccaccgaatccgcgcgccaggcgctgtcggcgatctaccgcagcggc
cagcgctacggcgtcggccatctggtggatatcctgctcggccgcgagaccgagaagatc
cgcagtctcggccaccagcacctggcggtgttcgggatcggcaaggggcgtggcgaagac
gaatggcggaccctgttccgccagttggtcgcgcgcggcctggccgacgtcgacctggac
ggcttcggcggcctgcgcctgaccgaggcctgtcgtccgctgctgcggggcgaggtgcgg
ctggagctgcgccgcgacctcaaaccacagcgcgccaagggctcctccagcggcggcgcc
agcgccgccagccaattggtgcgcagcgaagagcgggaaatgtgggaggccctgcgcgcg
ctgcggcgcaagctggccgaagagcattcggtgccgccctatgtgatcttccccgacgcg
accctgctggaaatgctccgcagccagccgcgctcgctatccgacatggcccaggtcagc
ggggtcggcgcgcgcaagctggagcgctacggccaggccttcctcgatgtcctcaccgac
tcgccggcggcgcccgccgcgccgccgcaggacctgcgccacgaattggccagcctggcc
tgtgcggggatgaccccggcgcagatagcccgccagctcaattgcagcgagaagaacgtc
tacgcgatgctcgccgaggccatcgccggtcagcaggtgagcctggagcaggcgctggat
ctgcccgaggaactcctcggcgaaatccaggacgccttcctcgaggaagacggcgaactg
ccgccggtggcggcgctggaggagcgtttcggcaagcgggtgccgagtggcgtgctgcac
tgcgtgcgcgccgccctgcaggtggaactggagtcgtga
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