KEGG   Pseudomonas aeruginosa YL84: AI22_28280
Entry
AI22_28280        CDS       T03035                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
paeg  Pseudomonas aeruginosa YL84
Pathway
paeg02020  Two-component system
Brite
KEGG Orthology (KO) [BR:paeg00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AI22_28280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:paeg03021]
    AI22_28280
Transcription machinery [BR:paeg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AI22_28280
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 HTH_IclR HTH_24 DUF8658 Xre-like-HTH GerE TnsD HTH_7 HTH_40
Other DBs
NCBI-ProteinID: AHH52727
LinkDB
Position
6106633..6107142
AA seq 169 aa
MSSADLAHAAALHTLYSDHHHWLTGWLRRRLGCPQNAADLAQDTFVKVLVSRQAARIDEP
RAFLTTIARRVLCNHYRRQDVERAYLEALASLPEREVPSEETRAIVLETLVELDRLLDGL
PPLAKETFLLAQLDGLGYAEIATQLGISLSSVKRYMLKAAQRCYFAEQP
NT seq 510 nt   +upstreamnt  +downstreamnt
gtgtcgagcgccgacctcgcccatgcggccgcgttgcataccctctacagcgaccaccac
cactggctcacgggctggctgcggcgccgcctcggctgcccgcagaacgccgccgacctg
gcccaggacaccttcgtcaaggtcctggtttcgcgccaggccgcgcgcatcgacgaaccg
cgcgccttcctcaccaccatcgcccgccgcgtgctgtgcaaccactaccgccgccaggac
gtcgagcgcgcctacctggaagccctggccagcctgcccgagcgggaagtccccagcgaa
gagacccgcgccatcgtcctggagaccctggtcgagctggaccgtctgctcgacggtctg
ccgccgctggccaaggagaccttcctgctggcccaactcgacggcctgggctacgccgag
atcgccacgcagctgggcatctccctgagcagcgtcaagcgctacatgctcaaggctgcg
caacgctgctacttcgccgagcagccatga

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