Paenibacillus sp. FSL H7-0357: H70357_21105
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Entry
H70357_21105 CDS
T03358
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paeh
Paenibacillus sp. FSL H7-0357
Pathway
paeh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paeh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H70357_21105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeh03019
]
H70357_21105
Enzymes [BR:
paeh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H70357_21105
Messenger RNA biogenesis [BR:
paeh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H70357_21105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIQ18916
UniProt:
A0A089I3V3
LinkDB
All DBs
Position
complement(4678694..4680271)
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AA seq
525 aa
AA seq
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MTFNDLNLIPAILKALSQENYTSPTPIQEESIPAALAGRDVLGCAQTGTGKTAAFSLPII
QLLSQQPSATGGRRRIRSLILTPTRELALQISENIQAYSKFTSIRSTAIVGGVSQKAQER
ALSQGADILIATPGRLIDLITQKHVDLQYVQILVLDEADRMLDMGFIHDVKRIIAKMPSK
KQTLFFSATMPTEISNLIKTLLVNPVKIEITPVSSTVDRIEQSIYLLENGNKQNQLNRLL
QDKSIVSALVFTRTKRGADRVTRDLTRINITAQAIHGNKSQNDRQNALRNFKSGATRVLV
ATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGIAISLCEAEEIPYLKDI
QKLIGKTIPEVKDHAYPMSKSAQALLNERPAKAPAKPAAKAKTNPARKPKSEWFTQGNRS
GSTSGGSKNSGQGSRLNGESAHQAGAGARPGSASAGGAGSSGRASGGNGSGASASSRPGG
YSGRPGERAGTGQNSRPAGSQGGRPGNNHSSRPGGRPAAKAGRSQ
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgacttttaatgatttgaatttgatcccagcgatcctcaaggcgttaagccaagaaaat
tatacatcacccacccccattcaggaggagtccattcccgcggctttggccggcagagac
gttctcggctgcgcacagaccggaacaggcaaaacagccgctttttccttgccgattatt
cagctgctaagccagcagccttctgcaaccggcggcagacgccggattcgttcgctgatt
ctcacaccgacaagagagcttgcactgcaaatctcggaaaatatccaggcttacagcaaa
ttcaccagtatccgttcaacagctattgttggcggtgtatcgcaaaaagctcaggagcgg
gcattaagccagggtgcggatatcctgattgccacgccaggccggctcatcgacctgatt
acccagaagcatgttgacctgcagtatgtgcagattcttgtactggatgaagcggaccgc
atgctggacatgggcttcattcatgacgtgaagcggattatcgccaaaatgccaagcaaa
aaacaaacattattcttctcggctacgatgccgacagaaatttcgaatttgattaaaaca
ctactggtgaacccggtgaaaatcgagattacaccagtttcctccaccgtggacagaatc
gagcagtcgatctatctgctggagaacggcaacaagcagaatcaattaaaccgccttctt
caggacaaatcgattgtctcggcactagtctttacccgcaccaaacgtggtgctgaccgg
gttacccgtgatttgacgcggattaatattactgctcaagcgattcacggcaacaaatcc
cagaatgaccggcaaaatgcgctgcgtaacttcaaaagcggagctacccgcgtgcttgtt
gctacagacattgccgcccggggaattgatattgacgagctgtcgcatgtcatcaacttc
aacctgccgaatattccggaaacttatgtccaccgtatcggccgtacaggccgtgccggt
atgagcggaatcgccatttctctttgtgaggccgaagagatcccgtacctcaaggatatt
cagaagctgatcggcaagacgatacctgaagttaaggaccatgcgtatccgatgtctaag
agcgcacaggctctgctgaatgaacgcccggcaaaagctccggcgaagccggcagccaag
gcgaagaccaatccggcgcgcaagccaaagtcggaatggttcacacagggcaaccgttca
ggcagcacttccggcggaagcaagaacagcggccagggcagcagactgaacggggaatcg
gctcatcaagcaggagcgggtgcaagacccgggagcgcttcggccggtggagctggttct
agcggcagagcaagcggaggaaacggcagcggagcaagtgctagcagccgcccaggcggc
tatagcggcagacctggcgaacgggctggtaccggacagaacagcagacctgccggcagc
caaggcggcagacccggtaacaaccacagcagccgcccaggcggcagacctgcagccaaa
gcgggcagatcgcaataa
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