Pseudomonas aeruginosa PAO1-VE2: N296_4734
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Entry
N296_4734 CDS
T03170
Name
(GenBank) tRNA-splicing ligase RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
paei
Pseudomonas aeruginosa PAO1-VE2
Brite
KEGG Orthology (KO) [BR:
paei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paei03016
]
N296_4734
Enzymes [BR:
paei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N296_4734
Transfer RNA biogenesis [BR:
paei03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N296_4734
Prokaryotic type
tRNA splicing ligases
N296_4734
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AGY68329
LinkDB
All DBs
Position
5133709..5134923
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AA seq
404 aa
AA seq
DB search
MKDMNILEVAGGKPIKLWTQGVPVEEEARQQLLNTAKMPFIFKHLAVMPDVHLGKGSTIG
SVIPTLGAIIPAAVGVDIGCGMIAARTSLVAADLPDNLHGLRSAIEQAVPHGKTFGRRDR
GAWHEVPEAADQAWKALAGRFKAITDKHPRLEKTNNRQHLGTLGTGNHFIEVCLDEADRV
WFMLHSGSRGVGNAIGNLFIELAKADMRQHIANLPDKDLAYFEEGSRNFDDYVEAVGWAQ
DFARQNRALMMHAVIEAARQVIRKPFEANLEAVDCHHNYVQKERHFGQEVLVTRKGAVSA
QKGQLGIIPGSMGAKSFIVRGLGNQEAFCSCSHGAGRTMSRTKAKKVFSVADQARATAHV
ECRKDADVIDEIPMAYKDIDRVMEAQRELVEVLHTLRQVVCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacatgaatatcctcgaagtggccggcggcaagccgatcaagctctggacccag
ggcgtcccggtggaggaggaagcgcgccagcagttgctgaacacggcgaagatgcccttc
atcttcaagcacctggcggtgatgcctgacgtacacctgggcaagggctcgaccatcggt
agcgtgatccctaccctcggcgcgatcatcccggccgcggtgggcgtggatatcggctgc
ggaatgatcgccgcgcgcacctcgctggtcgccgccgacctgccggacaacctgcacggc
ctgcgcagcgccatcgagcaggcggtacctcacggcaagaccttcggccgccgcgaccgc
ggcgcctggcacgaggtaccggaggccgccgaccaggcctggaaggcgctcgccggtcgc
ttcaaggcgatcaccgacaagcacccgaggctggagaagaccaacaaccgccagcacctg
ggaaccctcggcaccggcaaccacttcatcgaggtctgcctggacgaggccgaccgcgtc
tggttcatgctgcacagcggttcgcgcggggtcggcaacgccatcggcaacctgttcatc
gaactggccaaggcggacatgcgccagcacatcgccaacctgccggacaaggacctggcc
tacttcgaggaaggcagccggaacttcgacgactacgtggaagcggtcggctgggcccag
gatttcgcccggcagaaccgcgcgctgatgatgcacgcggtgatcgaggcggcgcgccag
gtgatccgcaagccgttcgaagccaacctggaggcggtcgattgccaccataactacgtg
cagaaggagcgccacttcggccaggaggtactggtcacccgcaaaggcgcggtgtccgcg
cagaagggccagctcggcatcattcccggctcgatgggggcgaagagcttcatcgtccgc
ggcctcggcaaccaagaagcgttctgctcgtgcagccacggcgccgggcggaccatgagc
cggaccaaggcgaagaaggtcttcagcgtcgccgaccaggcgcgcgccaccgcccacgtc
gaatgccgcaaggacgccgacgtgatcgacgagatcccgatggcctacaaggacatcgac
cgggtcatggaagcccagcgcgagctggtggaagtgctgcacaccctgcgtcaggtggtg
tgcgtgaaaggatga
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