Pseudomonas aeruginosa PAO1-VE2: N296_5107
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Entry
N296_5107 CDS
T03170
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
paei
Pseudomonas aeruginosa PAO1-VE2
Pathway
paei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N296_5107 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paei03019
]
N296_5107 (rnr)
03016 Transfer RNA biogenesis [BR:
paei03016
]
N296_5107 (rnr)
Enzymes [BR:
paei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
N296_5107 (rnr)
Messenger RNA biogenesis [BR:
paei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N296_5107 (rnr)
Transfer RNA biogenesis [BR:
paei03016
]
Prokaryotic type
tRNA degradation factors
N296_5107 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
MCM5_C
Motif
Other DBs
NCBI-ProteinID:
AGY68256
LinkDB
All DBs
Position
complement(5539776..5542490)
Genome browser
AA seq
904 aa
AA seq
DB search
MADWQNLDPEAAREAEKYENPIPSRELILAHLSERGAPATRSQLLDEFGLAGEEPEEALR
RRLRAMERDGQLIYTRRGAYAPVDKLDLIRGRISGHRDGFGFLIPDDGSDDLFLSPTQMR
LVFDGDRALARVSGHDRRGRREGQLVEVIERAHEIVVGRYFEESGIGVVVADNPKIQQEV
LIPPGKAGKARHNQFVQVRIEQWPSIHRQAQGEIVEVLGDYMAPGMEIEVALRSYDIPHV
WPAAVEKEAAKLKPEVAEKDKEKRVDLRQVPFVTIDGEDARDFDDAVYAEAKRGGGWRLF
VAIADVSHYVKVGSALDEEAARRGNSVYFPERVIPMLPEVLSNGLCSLNPLVDRLAMVCE
MTLSKAGKLTGYQFYEAVIHSHARLTYTKVSQLLEHPDSVEAENLRQQLPGVVPHLQQLY
ALYKALLAGRHVRGAIDFETQETRIVFGADRKISEIRPTQRNDAHRLIEECMLCANVATA
RFLQKHAIPALYRVHDGPPQEKLNNLRQFLGELGLSLGRGKAAPTPGDYQELLEKIHDRA
DFRLIQTVMLRSLSQAVYSPDNNGHFGLNYDAYTHFTSPIRRYPDLLVHRAIRSVIRSKA
ETPHVQRAGAASMPKARIYPYDELRLDQLGEQCSMTERRADEATRDVTNWLKCEYMRERV
GETFPGVITAVTGFGLFVELTDIFVEGLVHVTALPGDYYHFDAVHHRLSGERTGRSFRLG
DTTEVVVARVDLDERKIDFELAGNVLSAPIGRKKRNGDKSANAGKAPKGRKGASVPEVDL
EPALASPDAAVVPRRKAGKVQALPPVAPELLAQAAEMLGNTDVRKSREVKQALLAEARVG
GKDKGGKKGKVVPAGKSAKGKAKDGKPAAAAKPGKPTKHRKGPSKPKADNAPAATGARKR
KAKS
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaaaacctcgatcccgaggccgctcgcgaagcggaaaagtacgaaaac
cccatccccagccgggaactgatcctggctcacctatccgagcggggcgctccggcgact
cgctcccagttgctcgacgagttcgggctcgccggcgaggagccggaagaggccttgcgt
cgtcgcctgcgcgccatggagcgcgacgggcagcttatctatacgcgtcgtggcgcctat
gcgccggtggacaagctggacctgatccgcggccgcatcagcgggcaccgcgacggcttc
ggcttcctgatccccgacgatggcagcgacgacctgttcctcagtcccacccagatgcgc
ctggtgttcgacggcgaccgcgccctggcccgggtgtccggccatgaccggcgcggacgc
cgcgaaggccagctggtcgaggtgatcgagcgggcccacgagatcgtggtcggccgctac
ttcgaggaaagcggcatcggcgtggtggtcgcggacaacccgaagatccagcaggaagtc
ctgatcccgccgggcaaggccggcaaggccaggcacaaccagttcgtccaggtgcgcatc
gagcaatggccgagcatccaccgccaggcccagggcgagatcgtcgaggtgctcggtgac
tacatggcgccggggatggagatcgaagtcgccctgcgcagctacgatatcccccacgtc
tggccggccgcggtggagaaggaagcggccaagctcaagccggaagtggcggagaaggac
aaggaaaagcgtgtcgacctgcgccaggtgcccttcgtcaccatcgacggcgaggatgcc
cgcgacttcgacgacgcggtgtacgccgaggccaagcgcggcggcggctggcgcctgttc
gtggcgatcgccgatgtctcgcactacgtgaaggtcggttcggcgctggacgaagaggcg
gccaggcgcggcaactcggtgtatttccccgagcgggtgatcccgatgctgccggaggtg
ctgtccaatggtctctgctcgctgaatccgctggtcgaccggctggccatggtctgcgag
atgaccctgtccaaggctggcaagctgaccggctaccagttctacgaagcggtgatccac
tcccatgcccgcctgacctacaccaaggtcagccagttgctcgagcatcccgacagcgtc
gaggccgagaacctgcgccagcagttgcccggcgtggtgccgcacctgcagcagctgtat
gcgttgtataaagcgctgctggccggccgccatgtccgcggcgcgatcgatttcgagacc
caggaaacccgcatcgtcttcggcgccgaccggaagatctcggaaatccgcccgacccag
cgcaacgatgcgcaccgcctgatcgaagagtgcatgctctgcgccaacgtggcgaccgca
cgcttcctgcagaagcacgccatcccggcgttgtaccgggtgcatgacggcccgccgcag
gagaaactcaacaacctgcgccagttcctcggcgagctggggttgagcctcggccgcggc
aaggccgcgccgaccccgggcgactaccaggagttgctggagaagatccacgaccgcgcc
gacttccgcctgatccagacggtcatgctgcgttcgctcagccaggcggtgtacagcccg
gacaacaatggccacttcggcctcaactacgacgcctacacccacttcacctcgccgatc
cggcgctacccggacctgctggtgcatcgtgcgatccgcagtgtgatccgctccaaggcg
gagactccgcacgtgcagcgggccggcgcggcgagcatgcccaaggcgcgtatctatccg
tacgacgaattgcgcctggaccagttgggcgagcagtgctcgatgaccgagcggcgtgcc
gacgaggccacccgcgacgtgaccaactggctgaagtgcgaatacatgcgcgagcgggtc
ggcgagaccttccctggcgtaatcactgcggtcaccggtttcggtctgttcgtcgagctg
accgacatcttcgtcgaaggcctggtccatgtgaccgcgctgcccggcgactactatcat
ttcgacgccgtgcaccatcgcctcagcggcgaacgcaccgggcgcagcttccgtctcggc
gacaccacggaagtggtagtggcgcgggtcgacctggacgagcggaagatcgatttcgag
ctggccggaaacgtgctgagcgcgccgatcggacgcaagaagcgcaacggcgacaagtcg
gcgaacgccggcaaggcgccgaaggggcgcaagggcgcatccgtgcccgaggtcgacctg
gagccggcgctggccagtcccgacgccgcggtggtgccgcggcgcaaggccggcaaggtg
caggcgctgccgccggtcgcgccggagctgctggcgcaggccgcggagatgctcggcaac
accgacgtgcgcaagagtcgcgaggtgaagcaggcgctgctcgccgaggcgcgtgtcggc
ggcaaggacaagggcgggaagaagggcaaggtcgttcctgcgggcaagagcgcgaagggc
aaggccaaggacggcaagcccgccgctgccgccaagccgggcaagccgaccaagcatcgc
aaggggccttccaagccgaaggccgacaacgctccggccgccaccggggcgcgcaaacgt
aaggccaagtcatga
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