Paenibacillus sp. FSL H7-0737: H70737_00270
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Entry
H70737_00270 CDS
T03359
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paej
Paenibacillus sp. FSL H7-0737
Pathway
paej03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H70737_00270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paej03400
]
H70737_00270
Enzymes [BR:
paej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H70737_00270
DNA repair and recombination proteins [BR:
paej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H70737_00270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
AAA_16
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIQ21438
UniProt:
A0A089IFZ8
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All DBs
Position
54041..57565
Genome browser
AA seq
1174 aa
AA seq
DB search
MLQGIIEAFSKDPDFQSITQGVAAGMKEQLISGLTGSARQIMLAALHEETARPLLVVTHN
MFSAQKMADDLQEALSPERVLLYPANELVAAEAAVSSPETLAQRIDVLTKCAQGFRGIVV
VPYSGVRRLLPAPEVMAEAQVTVSQDGTLALDEFLMSMIEMGYERVERVENRGELSVRGG
IIDFYPMTSPLAYRVELFDDEVDSIRTFDPVDQRSIDKVRSVKITPAKEIIASRFRQESA
SAEASVMLERQLEKMADRQAKLRLKEEIGRELEMLREGTYFPEIYKYISLLYPERSHLFD
YMAQDTILILDEPTRLLETAKQLERDESEWNLHLMQNGKTLPDLDLSVETDVVMYKRPFQ
SLFMSIFLRQVPHIQPQNILGFISRGMQDFHGQMNVLKSEMERWQKSGVKVMMLASSEER
IERVRRVLYDYGIDEPTIVQGNLGSGFELPSIHLAVITEGEMFSQKQRKARKISKGIDNA
ERIKSYTELKIGDYVVHQNHGIGKYMGIGTLEVSGIHRDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKVYKLGGNEWTRVTNKVRSSVQDIADDLIKLYAERQSAAGYGFEKDTQ
EQREFEEMFPYEETRDQLRAIEEIKKDMEQNRPMDRLLCGDVGYGKTEVAIRAAFKSAIE
GKQVAVLVPTTILAQQHYETFRERFANYPLNIQVLSRFRSRKEQNETIKGVRAGTVDVVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQTLTREAVERELARGGQVYYLYNRVQGIQEMAAQ
ISMLVPEARVGIGHGQMSEAELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIRKRKVTVLGEEDTSLKEGNTVIDLS
IDAYLPSEYIYDSIQKIEIYKKVAAVTSFDDASELEDELLDRFGELPEAVVNLLTVARLK
VYGKMYGIDSMIRRGDDVTLNFYEGSLGALDTAKLAKVGNSFERRVQFDRDAKASIRVKS
KDLSDKQLLDLLEQFLKEAKQSFKSKGELHNVVK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaaggtattatagaagctttttccaaggatcccgatttccagtctatcacccag
ggtgtagctgcaggtatgaaagagcagctcatatcggggcttacaggttcagctagacag
atcatgcttgcagcactgcatgaagagacagctcgtcccttgcttgtggtgactcataat
atgttttcggctcagaaaatggccgatgatttacaggaagcgctttccccggaacgagta
ttgctctatcctgctaatgaacttgttgctgcggaagcggctgtctcaagtccagagaca
ttagcccagcgtattgatgtactgaccaaatgtgcccagggcttccgtggtattgttgta
gttccctactcgggagtgcgcagactgctccctgcaccagaggttatggcagaggcacag
gttacggtttctcaggatggaacgcttgctctggatgaattcttgatgtccatgatcgaa
atgggttatgaaagagtagagcgggttgagaatcgcggtgaactgagtgtaagaggtgga
attattgatttttatccaatgacttctcctttggcatatcgtgttgagttatttgatgat
gaggttgattccatcagaacttttgatccagtcgatcagcgttctattgataaagtacga
agtgtgaagattacaccggctaaagagattatagcgagcaggtttcgccaggaatctgct
tctgctgaagcatctgttatgctggaacgacagcttgagaaaatggcggatcggcaggct
aagttgcgtctaaaagaagaaattggacgcgagctagaaatgctgcgcgaaggaacctat
tttcctgaaatctataaatatatcagtcttttataccctgaacgctctcatttatttgat
tacatggcccaggatacgatccttattctcgatgagccgacaagactgcttgaaacggcg
aaacagctcgaaagagatgaatcggaatggaacctccatctgatgcaaaacggcaaaaca
ttgccggatctggatctctctgtcgagacagatgttgtgatgtacaaacgtccgttccaa
agcctgtttatgtcgatctttttgcgccaggtcccacacattcaaccacagaacattctt
gggtttattagtcgtgggatgcaggatttccatggtcagatgaatgtgcttaaatcggaa
atggagcgttggcagaagtctggtgtaaaggtaatgatgcttgcgagcagtgaagaacgg
attgaacgtgtgcgcagagtcctttatgactacggcattgatgagccaacgatcgtacaa
ggaaacctgggttcaggctttgagctgccttctattcatttagccgttatcactgaagga
gagatgttctctcagaagcagcggaaggcacggaagatctccaaagggatagataatgct
gaacggatcaagagttatactgagctgaaaattggtgattatgttgttcaccagaaccat
ggtatcggtaagtatatggggatcggcacgctggaggtcagcggtattcatcgcgactat
atgcatattttatatgcgggtggcgataagctctcggttccaattgagcaaattgacttg
attcagaaatatgtcggttcagaagataaagagccgaaagtatataaattaggcggtaat
gaatggacgcgggtgaccaataaggttcgctcttccgttcaggatattgctgatgatcta
atcaaactgtacgctgaacgccaaagtgcagcagggtatggttttgagaaggacacacag
gaacagcgtgaatttgaagaaatgttcccttacgaggagactcgggatcagcttcgagcg
attgaagagattaagaaggatatggaacagaatcgtccaatggatcggctcctttgtgga
gacgttggatatggtaagacggaggtagctatacgagcagcctttaaatcagcgattgaa
ggtaaacaggtggctgtgctggtaccgacaacgattctagctcagcagcattatgagacc
tttcgggaacgcttcgcaaattatccgctaaatattcaagtcctaagtcgtttccgcagc
cgtaaggagcagaatgagacgattaaaggcgttcgggcaggaacggttgacgtggttatt
ggtacccaccgtttgttgtctcaggaccttgtatttaaggacttaggtttattgatcgtg
gatgaggaacagcgatttggcgtgactcataaagagaagctgaagaagttaaaaacgaat
gtagatgttcttaccctgacagcaactccaattcctcgtacattgcatatgtcgatgctg
ggagtgcgtgatttgtctgtcattgagacgccgccggagaaccgtttccccgtccagact
tatgttgttgagcatagtcagacgcttacgcgggaagctgtagagcgtgaattggctcgt
ggcggtcaagtctactatctctataatcgtgtgcagggcattcaagaaatggccgctcaa
atttctatgcttgttcctgaggctagggtaggcatcggacatggccaaatgtcggaagca
gagctggagaagacgatccttgattttcttgatggagaatacgatgtgctggtcagcaca
agtattattgagacgggtgtagatattcctaacgtaaatacacttattgtgcatgatgcc
gataagatgggcttgtctcagctctatcaattacgtggacgtgtaggccggtccaaccgg
attgcgtacgcctattttacctaccagcgggacaaggttctgactgaagtggcagagaag
cggctgcaatctattaaggaatttacggaactgggttctggtttcaaaatagcgatgcgg
gatttatctattcgtggtgccggtaacttacttggtgcagaacagcatggctttattgca
tccgtgggatttgatctatactcacaaatgctggcggaggagatccgcaagcgtaaggtt
actgtgcttggagaggaagacacctcgctcaaagagggcaataccgtcattgatttgtcg
attgacgcatatctgccgtccgagtatatttacgacagtatccagaaaattgaaatctac
aaaaaagttgcggcagtaacatccttcgatgatgcttctgagcttgaggatgagctcttg
gatcggttcggagaactgcctgaagcagttgttaatctattaactgtggctcgtctaaaa
gtgtatggaaaaatgtatggtattgactccatgatcagacgtggtgatgatgttaccctg
aatttctatgagggaagtcttggcgctctggatacggccaaactcgccaaagttggaaat
agcttcgaaagacgtgtacaattcgatagagatgctaaagccagtatccgagtaaagtcg
aaagacttaagtgataaacagctgcttgacttgcttgaacagtttcttaaggaagctaaa
cagtcttttaaatcgaagggagaactacacaatgtcgttaaataa
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