Paenibacillus sp. FSL H7-0737: H70737_18415
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Entry
H70737_18415 CDS
T03359
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paej
Paenibacillus sp. FSL H7-0737
Pathway
paej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H70737_18415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paej03019
]
H70737_18415
Enzymes [BR:
paej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H70737_18415
Messenger RNA biogenesis [BR:
paej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H70737_18415
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Extensin_1
SUa-2TM
DUF34_NIF3
ASFV_J13L
Motif
Other DBs
NCBI-ProteinID:
AIQ24643
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All DBs
Position
complement(4105779..4107164)
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AA seq
461 aa
AA seq
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MTFNELNIMPAILKALTKENYTSPTPIQEQSIPAVLAGRDLLGCAQTGTGKTAAFSVPII
QLLSEQSSPNKSSNVRRIRSLILTPTRELAIQIADNIKAYSQFTDIRSAAIVGGVSQKVQ
ERALNQGADILIATPGRLIDLINQKRVDLQYVQILVLDEADRMLDMGFIHDVKRIIAKMP
TKKQTLFFSATMPTEISKLIKTLLVNPVKVEITPVSSTADRIDQSIYLLENGNKQNQLNL
LLQDKSIISALVFTRTKRGADRVTRDLAKVNISAQAIHGNKSQNDRQNALRNFKSGATRV
LVATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCESEELPFLK
DIEKLIGKSIPEVKDHPYPMSRKTQMKTERSSKPSGSRSASSKPSTSRPSTAKPAGAKPA
ASKPAASKPAASKPAKAKPKSNPPLKPKSEWFTKGRQTSSR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaacgaactgaatattatgcctgcgattttaaaggctttaaccaaagaaaac
tatacatcacctacacctatacaggagcaatcgatcccagctgtattagcaggtagagat
ttacttggatgtgctcaaacgggaacaggaaagacagctgctttttctgtacctatcatt
caattattaagcgaacaatcaagtcccaataaatcaagcaatgtgcgacgcattcgctcg
ctgatcttaacaccgacaagagaactagcgattcaaattgctgataacataaaagcgtat
agccaattcacagatatccgctctgctgccatcgttggcggtgtatcacagaaagtgcaa
gagcgtgccttgaatcaaggtgctgatattctaattgctactccaggtagacttatcgac
ctgatcaatcaaaaacgtgtagacttacagtatgtccaaattcttgtcttggatgaggct
gaccgcatgctagatatgggcttcatccatgatgtgaagcgaattatcgccaaaatgcca
acgaagaaacaaacactgttcttctcggcaacgatgcctactgagatctccaaattgatc
aaaaccttgcttgtgaatccagtaaaagtagaaatcacacccgtgtcatctactgcggat
agaatcgatcaatcgatctatttattagagaatggaaataagcagaatcaattgaatctt
ttgttacaggataaatcaatcatttctgcgctggtgtttactcgtacaaaacgtggtgcg
gaccgtgttacacgcgatctagcgaaagtgaacatttctgcacaggccattcatggcaat
aaatcgcagaatgatcgtcagaatgcattgcggaattttaaaagtggtgcaacccgcgtt
cttgtagctacagatatcgccgcgcgaggaattgatattgatgagttatctcatgtaatc
aacttcaacttgccgaatattccagaaacctatgtgcaccggatcggtcgtacgggtaga
gctgggttaagcggaacggcaatatctttttgcgaatctgaagagcttccgttccttaaa
gatatcgagaaattgatcggaaaatcgattccagaagtgaaggatcatccgtatccgatg
tctcgtaaaacgcaaatgaagacagaaagatcttcgaaaccgtcaggttcgagatctgca
tcttctaaaccatcgacttccagaccatcaacagctaaaccagcgggggcaaaaccagcg
gcatctaaacctgcggcatctaaacctgcggcatctaaacctgccaaagcaaaacctaag
tctaaccctccattaaagccaaagtccgagtggttcactaaaggaagacaaacgagcagc
agataa
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