Paenibacillus sp. FSL H7-0737: H70737_28675
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Entry
H70737_28675 CDS
T03359
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paej
Paenibacillus sp. FSL H7-0737
Pathway
paej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H70737_28675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paej03019
]
H70737_28675
03009 Ribosome biogenesis [BR:
paej03009
]
H70737_28675
Enzymes [BR:
paej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H70737_28675
Messenger RNA biogenesis [BR:
paej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H70737_28675
Ribosome biogenesis [BR:
paej03009
]
Prokaryotic type
rRNA helicases
H70737_28675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIQ26460
LinkDB
All DBs
Position
complement(6378736..6380541)
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AA seq
601 aa
AA seq
DB search
MPGFKELGVSELLCTLLQGQGIVKPTPVQQEAIPPLVQGLDVIARAKTGTGKTLAFLLPI
MDKIHTERAYPQALIMAPTRELALQITEEARKLARHTDIKILAVYGGQDVEKQLRKLEGG
RHLIIGTPGRLLDHMRRETLDLSGVKMLVLDEADQMLHMGFLEDVETIITAVPYRRQTML
FSATMPDPIKRLAANYMKEPLDIIIKSGSPIPLDNIKQQVVEVSDRNKEEALKTLIERDR
PYLAIIFCRTKRRVSKLNEALQAAGYDCDELHGDLSQGKREGVMKRFRDAKLQLLVATDV
AARGLDVEGITHIFNYDMPLDVDSYIHRIGRTGRAGGKGLAITFTSPREQDGLDLIEHGI
SQRLDRRRYDKDEFGVGEFVAVQGGGRHGGRQSGGAEAARTGRGPKTGGSGRGGAPRGEG
GARQGGRGRGKEAGGWGAPAEGRRGGRSDAAAGKRGGSGYDAAAPKGGGKAAGVVRVGGG
YGAFASRGDAPASGNAAAPSSAGSRGANRKGGPSTGYSENVARGADGGAYVGGTPRGGLG
SGYGTGPSRGGGKGGKGSKGGYSGAKGGAGKGGRNSGNTGSSRGGRGSSGGFKSGGRGTS
R
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
ttgccgggatttaaagaattaggtgtttcagaattactgtgtacattgcttcaaggtcaa
ggcatcgttaagcctacaccagtgcaacaggaagcaataccgccattggtgcagggtttg
gatgtaattgcaagagcgaagacaggtacagggaagacattagctttcttgctgccaatt
atggacaagatccacacggagcgagcttatccgcaggcgctaattatggccccaacacgt
gagttggctttgcagattacagaagaggcacgtaagctggcgcgtcatacggatattaaa
atcttggccgtttatggtggtcaggatgttgagaagcagctgcgtaagctcgaaggtggc
agacatcttattatcggtacaccgggcagactgctagatcatatgcgccgggagacgctc
gatcttagtggcgttaagatgctcgttctggacgaagcggatcaaatgctgcatatggga
ttcttggaggatgtagagaccattattacggctgttccttatcgccgtcaaacgatgttg
ttctctgcgacgatgccagatccgattaaacgtctcgcagctaattacatgaaagagcct
ctggatatcattattaagagtggttctccgattccgctggataatatcaaacagcaagtc
gtggaagtctcggatcgtaataaagaagaggcactcaaaacattgattgaacgggatcgt
ccttacttggctattattttctgccggaccaaacgtcgggtgtccaagctgaacgaagca
ctccaagcagcaggttatgattgtgatgagctgcacggtgatttgtctcaaggtaaacgc
gaaggtgtaatgaagagattccgtgatgcgaagctgcagcttcttgtagctacagatgta
gcggctcgggggttggatgtcgaaggtatcactcatatctttaactacgatatgccactt
gatgtggatagctatattcaccggatcggccggacaggccgtgccggaggcaaagggctt
gcaattacgttcacttctccacgtgagcaagatggactagacttgatcgagcacggcatt
tcgcagcgcctggatcgccgccgttacgacaaagatgaattcggcgttggcgaattcgtt
gcagtacaaggcggcggacgccacggcggtcgtcaaagcggcggcgctgaggcagcgcgc
acgggccgcggaccgaagaccggcggctctggccgcggcggtgctccgcgcggcgaaggc
ggagcgcggcaaggtggccgcggccgcggtaaggaagcaggcggctggggtgcgcctgca
gaaggtcgccgcggtggtcgttccgatgcggcggctggcaagcgtggcggcagcggctat
gacgctgccgcacctaagggcggcggcaaggctgccggcgtagtacgagtaggcggcggc
tatggcgccttcgcctccagaggcgatgcgccagctagcggcaacgcagcagcgcctagc
agtgccggttcgcgcggtgcgaaccggaagggcggcccaagcactggctacagcgagaac
gtagccagaggtgcagacggcggcgcttacgttggtggcacaccacgaggcggcttaggc
agcggctacggtacgggcccgtctagaggcggcggcaaaggtggtaaaggtagcaaaggc
ggctatagcggtgccaagggtggcgctggtaaaggcggccgcaacagcggaaatacgggt
tcctcacggggtggacgtggtagctccggcggctttaaaagtggcggcagaggcacatcc
agataa
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