Paenisporosarcina cavernae: D3873_05505
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Entry
D3873_05505 CDS
T05647
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
paek
Paenisporosarcina cavernae
Pathway
paek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3873_05505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paek03019
]
D3873_05505
03400 DNA repair and recombination proteins [BR:
paek03400
]
D3873_05505
Enzymes [BR:
paek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D3873_05505
Messenger RNA biogenesis [BR:
paek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D3873_05505
DNA repair and recombination proteins [BR:
paek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D3873_05505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
SNF2-rel_dom
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AYC29364
UniProt:
A0A385YS82
LinkDB
All DBs
Position
1102751..1104184
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AA seq
477 aa
AA seq
DB search
MEMDRLDQTLNAYFGYDSFKGSQKEIITSILAGEDVIAFLPTGMGKSLTYQLSGLLLPGL
VLIISPLLSLMEDQVDQMKKMGLKNSASLNSLKSSVQKREILRQVNSYKYLFLSPEMLMQ
QDVRSILRESVISLIVVDEAHCISQWGSDFRPDYLRLEEWIGEYSNVQKLALTATATRQV
RQDIEKVLRLEKPSVFQSSVNRHNIYYQTEFLPNETSKLERIEELMHQTSTSGIVYTLSR
KKADDYAEILRQKGYSIVAYHAGLEKEDRLIIQQQFINGELDWIVATSAFGMGVHKADVR
FVIHDYLPGSIHEYMQESGRAGRDGVQSASVILLHERDHEKTIFTKTNGMVNESDLSLFT
HYEGSLSELVENGLVEETKLRIWSYWKERLQYEELESHFNRLKAGKMKDIFAVQSLFYED
RCIRKQLVEYYGEDLTDQQTPCCSVCDAEFSSLILSFTREKPLIENSDWLNRLRNLL
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggacagactggatcaaacacttaatgcctattttggatatgattcatttaaa
ggttctcaaaaagaaattattacaagcattttagctggtgaagatgtcattgcattttta
ccaactggaatgggaaaatcgcttacctatcaattaagtggacttttgttaccaggttta
gttttaatcatttctccgttactttctttaatggaagatcaagttgaccaaatgaaaaaa
atgggattaaaaaatagtgcttctcttaattcattaaaatcgagtgtgcaaaaaagagaa
atccttcgtcaagtaaattcgtacaaatatctttttctctcgccagagatgttaatgcag
caagatgtacgttccatactacgggaatccgtcatttcactaatagtcgtggacgaggcg
cattgtatttcacagtggggatcagatttccgtccagattatttacgtttagaagagtgg
attggagagtactcgaacgtacaaaagcttgctttaacggcaactgcaacgaggcaggtt
cgtcaagatattgaaaaggtacttcggttagagaaaccgagtgtttttcaatcatctgtc
aatcgacacaatatctactatcaaacagagtttctgccaaacgaaacaagtaaacttgag
cgaatagaagaattaatgcatcaaacttctacttcgggaattgtatacacgttatcgcga
aaaaaagcggatgattatgcagaaatcctgcgtcaaaaaggatattctattgtagcctat
catgccggtttagagaaggaagatcgactcatcattcagcaacaattcatcaacggggag
ttagattggatagttgcaacaagtgcattcggaatgggtgtccataaagcagatgtccgt
tttgtcatacatgattatttaccgggttctattcatgaatacatgcaggaatcaggaaga
gcgggtagagacggagttcaatctgcatccgttattcttttacatgagcgtgaccatgaa
aaaacaattttcacgaaaacaaatggaatggtaaatgaaagtgatttgtctttatttacc
cactatgaagggtctctctcagagttagttgaaaatggattagtagaagaaacaaagctt
cgaatctggtcgtattggaaggaaagattacagtatgaggaattagagtcccattttaac
cgtttaaaagcaggcaaaatgaaagatatattcgcggttcagtcacttttctatgaggac
agatgtatacgaaaacaactagtagaatattatggggaagatttgacggatcagcagact
ccgtgttgttcggtgtgtgatgcagaattttcttccttgattctttcgtttacacgagaa
aaaccactaatagagaacagcgactggttaaatcgattgcgaaatttgttgtaa
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