Paenisporosarcina cavernae: D3873_10680
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Entry
D3873_10680 CDS
T05647
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
paek
Paenisporosarcina cavernae
Brite
KEGG Orthology (KO) [BR:
paek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
paek03009
]
D3873_10680 (rlmD)
Enzymes [BR:
paek01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D3873_10680 (rlmD)
Ribosome biogenesis [BR:
paek03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D3873_10680 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
MTS
PrmA
Methyltransf_15
Methyltransf_11
RrnaAD
N6_N4_Mtase
Methyltransf_12
Methyltransf_23
PCMT
N6_Mtase
TPMT
Motif
Other DBs
NCBI-ProteinID:
AYC30291
UniProt:
A0A385YUZ1
LinkDB
All DBs
Position
complement(2065998..2067362)
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AA seq
454 aa
AA seq
DB search
MSLPVKKNDQLDVYIEDLTHDGSGVAKVEGYPLFIPGSLPGETVRIHVVKTLKKYGFGKL
LEIVQPAENRVEPPCPVFHVCGGCQVQHLTYEGQLAMKHSMVRSVIDRIAKLPHVPVHPV
LGMENPWRYRNKSQIPFGTQNGRMVSGFYKTRTHEIVDTDVCLIQQPEGDDILQALTNEF
EKLGVMPYDEETGRGMLRHVVIRKGFATGEIMVVLITKKKKWAEKEQVVEAVRRIVPDVT
SIIQNVNSEKTNVIFGNETLTLWGKDTITDTIGDVKFDISARSFYQVNPVQTEVLYGKAL
EYANLTGGESVIDAYCGIGTISLFLAKNAKHVYGVEIVPEAIEDAKKNAAINGISNATFE
AGPAEVVIPNWYKQGVKADVLVVDPPRKGCDETLLQTIITERPKKIVYVSCNPATLARDL
RILEDGGYETKEVQPVDMFPQTTHCEAVAWLELR
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaccagtcaaaaagaatgatcaacttgatgtttatatagaagatttaacacat
gacggatcaggagttgcgaaagtcgagggctacccgcttttcattcctggaagtttaccc
ggagaaactgtccgtattcatgtcgtgaaaacgttaaaaaaatatggctttggaaaactt
ctcgaaatcgtccaaccagctgaaaatcgagtagagccaccatgtcctgtctttcatgtg
tgcggaggctgccaagtgcagcatttaacatacgaaggacagcttgcgatgaagcattcc
atggtacggagtgtcattgaccgtattgcgaaacttcctcatgtgccagtacatcccgtc
cttggaatggaaaatccgtggcgttaccgaaacaaatcgcaaatacctttcggcacgcaa
aacggtcgaatggtaagcggattttataaaacacgtacccacgaaattgtcgataccgat
gtttgtctcattcaacaaccagaaggtgatgatatactccaagccttaacgaacgaattc
gaaaaactcggagtcatgccatacgacgaagaaacaggtcgcgggatgcttcgacatgtc
gtcattcgaaaaggctttgcgacgggagaaatcatggtcgtgctcattacgaaaaagaaa
aagtgggccgaaaaagagcaagtagtagaagcggttcgacgcattgtaccagacgtaaca
tccatcattcaaaacgtgaatagcgaaaaaacgaacgttatttttggaaatgaaacactc
accctttggggaaaagacacgattacagataccattggcgacgtgaaattcgatatttcc
gccagatcgttttatcaagtcaatcccgttcaaacggaagtgttatacggaaaagcacta
gagtacgcaaacttaacaggtggagaatccgttatagatgcatattgcggaatcgggacg
atttctttattcctagcaaaaaatgcgaagcacgtgtacggtgttgaaattgttccagaa
gcgattgaagatgccaaaaagaatgcggctatcaatggtatttcgaacgcgacatttgaa
gcgggtcccgcagaagtcgtgatacctaattggtacaaacaaggagtgaaagcagacgta
ctagtcgtcgatccaccgcgcaaaggatgcgacgaaacgttattacaaacgattattacc
gaacgaccgaagaagattgtgtatgtttcttgtaatccagcaacactcgcaagagatctc
cgcatactcgaagacggtggatatgaaacaaaagaagtgcaaccagtagatatgtttccg
caaacaactcattgcgaagcagtcgcgtggttggaattgaggtaa
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