Paenisporosarcina cavernae: D3873_13085
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Entry
D3873_13085 CDS
T05647
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paek
Paenisporosarcina cavernae
Pathway
paek03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D3873_13085 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paek03400
]
D3873_13085 (mfd)
Enzymes [BR:
paek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D3873_13085 (mfd)
DNA repair and recombination proteins [BR:
paek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D3873_13085 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
DUF5398
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AYC30695
UniProt:
A0A385YUX8
LinkDB
All DBs
Position
complement(2495419..2498955)
Genome browser
AA seq
1178 aa
AA seq
DB search
MQASLQAMKVQETIAQTIDTIHGTPGAYLMTGLTGSAKAMMAEVIRDELQQPMLVVTANL
LQAQKMAEDLQKIANLPVYIYPAEELIAADLSISSPELRAERIEALDFLARQEAGIIVSP
IAGLRRRLPTLEEWNRHRLILSVGEDLPDFDWTDTLISMGYKRQGMVTTPGEFSMRGGII
DIFPIYEAYPYRMELFDTEIDSIRAFSAEDQRSLHKVENLTLLPATEFFWTEEKRQAIAN
RLEKQLTKTYKKVKKEEVKAKLSENIQADIEALRTGRDAAHLQRYASLLDEQTTFLGDYF
SSTGIVIFDEIGRIQETVESLEKEEQDWVIDLLEEGKIVHDIQLSLSWKEIIHQLPERKL
FFSLFSRAFSGLGIVKSFAFSCKPMQQFHGQMHVLQHEYDRFKKERAKVFIAVEGAARQE
KVATILEDYQIPATILSSDESVSSPGVYVVDLSLNDGFELPLQQLAVITDQELFQQKPKK
KKKVQKLSNAERIKSYSEISPGDYVVHIHHGIGKYIGMETLEVGGIHKDYLHIRYRAEDK
LFVPADQIDLIQKYVGSEDREPKVHKLGGAEWKKTKTRVTTAVKDIADELIKLYAKREAE
KGFAFEKDGEMQQQFESAFFYEETDDQLRSIQEVKEDMEKERPMDRLLCGDVGYGKTEVA
IRAAFKAVQDSKQVAFLVPTTILAQQHFETIKERFRDFPVEVSLLNRFRTKKEQAETLKG
LKEGTVDVVVGTHRLLSKDVVYRDLGLLIVDEEQRFGVTHKEKLKQLKTNVDVLTLTATP
IPRTLHMSMIGVRDLSVIETPPADRYPVQTYVMEHNGAIVREAIEREMARGGQTFYLYNR
VEDMTKKVDEIQALVPQARVGYVHGQMPESELEGVLLPFLEGEYDVLVTTTIIETGMDIP
NVNTLIVQDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRPDKVLTDVAESRLQAIKEFTE
LGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYAQLLQEAVEEKQTGIVKADIPDV
EIQLPIDAYFADDFISDGFQKIQMYKRVKAIDSETGYFDLVDELTDRFGDLPVEAERLLR
IARMKVWANKAGVESIKQSRHLITIQLSPEGTRTIDGGKLVEQSMEFGRAVGFQMTNQQT
LAVTIDTKQTKKITPFDVVEKMVELLPQSQKTSEGLEA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccagtcttcaagcgatgaaagtgcaggaaacgattgcacaaaccatcgatacc
attcatggaactcctggagcatatttaatgacaggactcactggttcagccaaggccatg
atggcggaagtaatccgtgatgaactgcaacaacccatgctggtcgtaactgccaattta
ttgcaggcacaaaagatggcggaggatttgcagaaaatagctaacttacccgtttatata
tatccagcagaagaattaatcgctgctgatttatccatttctagtccagagcttcgagcg
gaacgaatcgaagcgttggattttttggcgcgtcaagaagcagggattattgtgtcacct
attgcgggtttgcggagaagattaccgacattagaggaatggaaccgtcaccggttaatc
ctatccgttggcgaggatctacctgatttcgattggaccgacacgctcatttcgatggga
tataaacgtcaagggatggtgacaacacctggtgagttttccatgcgtggaggaattatc
gatatcttccctatttatgaagcgtatccgtatcgaatggaattgtttgatacagaaata
gattcaattcgtgcgttttccgcagaagaccagcgatctttacataaagtagagaatttg
acgttattaccagctaccgaattcttttggacggaagagaagcggcaggcgatagctaat
cgattagaaaaacaattaacaaagacatataaaaaagtgaaaaaagaagaagtaaaagca
aaactctccgaaaatatccaagcggatatagaagcacttcgcacgggaagagacgctgct
cacttacaacgatatgcaagtttgttagacgagcaaacgacatttttaggcgattatttt
agctcgacaggtatcgttatttttgatgagataggtagaattcaagaaacggtggagtcc
ctggagaaagaagaacaagattgggtcattgatttactcgaggaagggaaaattgtccat
gatattcaactttccttgtcgtggaaagagattattcatcagttgccagagcgaaaactt
ttcttttcgttatttagtcgggcgttttcaggactaggaattgtaaagagctttgcgttt
tcctgtaaaccaatgcaacaattccatggccaaatgcatgtacttcaacacgaatacgat
cgtttcaaaaaggaacgagcgaaagtatttattgccgtagaaggcgctgctcgacaagag
aaggtagcaactatactggaggactaccaaattccagcaaccattctttctagtgatgaa
agtgtatcttcaccaggtgtatatgtggtggatttgtccttaaacgatggatttgaatta
cctttacaacaacttgccgttattacggatcaggagttgttccaacaaaaaccgaagaaa
aagaaaaaagtacaaaagcttagtaatgcggagcgaattaaaagctattcggaaatttcg
ccaggagattatgtggtgcatatccatcacggtattgggaaatatatcggcatggaaaca
cttgaagtaggtggaatccataaggattatttgcatattcgatatcgtgcagaagataag
ttatttgttcctgctgatcaaattgatttaatccaaaaatatgtaggttctgaagatcgt
gaaccaaaagtgcataaacttggcggagctgagtggaagaaaacgaaaacgcgtgttact
acggcggtaaaagatatcgcagatgagctgatcaaattatatgccaaacgagaagcagaa
aaaggtttcgcatttgaaaaagatggagaaatgcagcagcagtttgaatcagcttttttc
tatgaagaaacagatgatcaacttcgttcaatccaagaagtaaaagaagatatggaaaaa
gaacgcccgatggatcgcttgttgtgcggggacgtggggtatggaaaaacggaagtcgcg
attcgagcggcattcaaagcggttcaagacagcaagcaagtggcgtttttagttccaacg
accatcttggcgcagcaacactttgaaacgattaaagaacgttttcgtgacttcccggtg
gaagtatcgcttcttaatcgattccgtacaaaaaaagagcaagcagaaacactaaaggga
ttaaaagaagggacagtggatgtcgtcgttggaactcaccgactactttctaaagatgta
gtataccgtgatttaggactactcattgtcgatgaagaacaacgttttggcgttacgcat
aaagagaaactaaagcaattaaaaacgaatgtggacgtattgaccttaacggcaacgcct
attccacgcacccttcatatgtcgatgataggagttcgtgatttgtcggttattgaaaca
ccccctgcagatcgctaccctgttcaaacgtatgtgatggaacacaatggtgctattgtg
cgtgaagcgattgaacgagaaatggctcgtggaggtcaaacattttacttatataatcgg
gtagaagacatgacgaaaaaagtggatgaaatccaagcgcttgttccgcaagcgcgagtt
ggatatgttcatggacaaatgcctgagtcggagctagaaggagtattgcttccattttta
gagggagagtacgacgtgttagtgacgacaacgattatagaaacaggaatggatattccg
aatgtcaacacgttgatagtgcaagacgctgatcggatgggactgtcgcagttgtaccaa
ttacgtggtcgcgtcggaaggtcgaaccgagtagcttacgcctactttacgtatcgtcct
gataaagtgctgactgacgtagccgaaagtcgactacaagcaattaaagaatttacggaa
cttggatctggatttaaaattgcgatgcgtgatttatccattcgtggagcagggaattta
cttggtgcagaacaacacggattcatcgattccgttggctttgatttgtatgcgcaacta
ttacaagaggcagtggaagaaaaacaaactggtatcgtgaaagcagatatccccgacgtc
gaaatccaattgccaattgatgcttattttgcggatgattttatttccgatggttttcaa
aaaattcaaatgtataaacgtgttaaagcgattgacagtgaaactggctatttcgatcta
gttgatgaattaacggatcgatttggagatttgccagtagaagctgaacgattgttgcgg
atcgcgcgtatgaaagtatgggcgaataaagcaggcgtggagtccattaaacagtctaga
cacttaatcaccatccagctctcgccagaaggaacgcgaacaatcgatggcggaaaattg
gtggaacagtcgatggagttcggtcgcgctgttggattccaaatgacgaaccaacaaaca
ttagctgtcacgattgatacgaaacaaacaaaaaaaataacgccatttgatgtggtagaa
aaaatggtggaactattacctcaatcacaaaaaacgtctgaaggtttggaagcataa
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