Pseudomonas aeruginosa LES431: T223_10530
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Entry
T223_10530 CDS
T02970
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pael
Pseudomonas aeruginosa LES431
Pathway
pael03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pael00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T223_10530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pael03019
]
T223_10530
03009 Ribosome biogenesis [BR:
pael03009
]
T223_10530
Enzymes [BR:
pael01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
T223_10530
Messenger RNA biogenesis [BR:
pael03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
T223_10530
Ribosome biogenesis [BR:
pael03009
]
Prokaryotic type
rRNA processing factors
T223_10530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHC64727
LinkDB
All DBs
Position
complement(2216921..2220094)
Genome browser
AA seq
1057 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREGLNGLNAPADMGLIVRTASLGRSTEELQW
DLDYLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALN
FIRQVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHF
EVQRLRDDSPELVAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEA
PVEPAKPMPEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNR
RRDGRDGNRRDEERKPREERAERQPREERAERPNREERSERRREERAERPAREERQPREG
REERAERTPREERQPREGREGREERSERRREERAERPAREERQPREGREERAERPAREER
QPREDRQARDAAALEAEALPNDESLEQDEQDDTDGERPRRRSRGQRRRSNRRERQREVSG
ELEGSEATDNAAAPLNTVAAAAAAGIAVASEAVEANVEQAPATTSEAAGETTASDETDAS
TSEAVETQGADSEANTGETADIEAPVTVSVVRDEAGQSTLLVAQATEEAPFASESVESRE
DAESAVQPATEAAEEVAAPVPVEAAAPSEPATTEEPTPAIAAVPANATGRALNDPREKRR
LQREAERLAREAAAAAEAAAQAAPAVEEVPAVASEEASAQEEPAAPQAEEIAQADVPSQA
DEAQEAVQAEPEASGEDATDTEHAKKTEESETSRPHA
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcgactcaacccgaggagttgcgtgttgcactggtcgac
ggccaacgcctgttcgacctcgacatcgagtcgggcgcccgcgagcagaagaaggccaac
atctacaaaggccgcatcactcgcgtcgaacccagcctcgaagccgccttcgtcgacttc
ggcgccgaacgccacggcttcctccccctcaaagaaatctcccgcgaatacttcaagaaa
tcccccgaaggccggatcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgcggcaacaagggcgccgccctgaccaccttcatcagcctg
gccggccgttacctggtgctgatgccgaacaacccgcgcgccggcggcatctcccgccgt
atcgaaggcgaagagcgcaacgagctgcgcgagggcctgaacggcctcaacgcaccggcc
gacatgggcctgatcgtgcgcaccgccagcctcggccgcagcaccgaggaactgcagtgg
gacctcgactacctgctgcaactgtggagcgcgatcaaggaagcgtccggcgaacgtggc
gcgcccttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgaac
ttcatccgccaggtgatgccgcagtacgccagcaaggtgaagctgtaccaggacagcgtt
ccgctgttcaatcgcttccagatcgagagccagatcgagaccgctttccagcgcgaagtg
aagctgccgtccggcggctccatcgtcatcgacccgaccgaggccctggtttccatcgac
atcaactcggcgcgcgccaccaagggcggcgacatcgaggaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagagcgtgtc
cgcgaagccctcgaggccgaccgcgcgcgcgtccaggtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgccagcgcctgcgtccgtccctcggcgagaccagcggcatcgtc
tgcccgcgctgcaacggccagggcatcatccgcgacgtcgagtcgctgtcgctggccatc
ctgcgcctgattgaggaagaagccctgaaggaccgcaccgcggaagtccgcgcccgcgtg
cccttccaggtcgccgccttcctgctcaacgagaagcgcaacgccatcaccaagatcgaa
ctgcgtacccgcgcgcgcatcttcatcctgccggacgatcatctggaaaccccgcatttc
gaagtccagcgtctgcgcgatgacagccccgaactggttgccggccagaccagctacgaa
atggccaccgtcgagcacgaagaagcccagccggtcagctcgacccgcaccctggtccgc
caggaagcagcagtcaagaccgtcgctccccagcagcccgcaccgcaacacaccgaagca
ccggtcgagccggccaagccgatgcccgagccgagcctgttccagggcctggtgaagtcc
ctggtcggcctgttcgcaggcaaggatcaacctgccgccaagcctgctgaaaccagcaag
ccggctgccgagcgccaaacccgccaggacgagcgtcgcaacggccgccagcagaaccgc
cgccgcgatggccgcgatggcaatcgccgcgacgaagagcgcaagccccgcgaggaacgc
gcagagcgtcaaccgcgcgaagagcgcgccgaacgcccgaaccgcgaagagcgcagcgaa
cgtcgccgcgaagagcgcgccgagcgcccggctcgcgaggagcgccagccgcgcgaaggc
cgtgaagagcgcgccgagcggacaccccgcgaagagcgccaaccgcgcgaaggccgcgaa
ggtcgcgaggaacgcagcgaacgccgccgcgaagagcgcgccgaacgcccggcccgcgaa
gagcgccaaccccgcgaaggccgtgaagaacgcgccgagcgcccggcccgcgaagagcgc
cagccgcgcgaggatcgccaggctcgcgacgccgcggccctggaagccgaggcattgccg
aacgacgagagcctggagcaggacgagcaggacgataccgatggcgagcgcccgcgccgc
cgctcccgcggccagcgtcgtcgcagcaaccgccgcgaacgccagcgcgaggtcagcggc
gagctggaaggcagcgaggcgaccgataacgccgccgcgccgctgaacaccgtcgcagcc
gccgccgctgccggtatcgctgtcgccagcgaagccgtagaagcaaacgtggagcaagcc
ccggccactaccagcgaggctgccggcgaaaccacggcaagcgatgagaccgacgcgtcg
accagcgaagccgtcgaaacccagggcgcggacagcgaggccaataccggcgaaaccgcc
gacatcgaagcgccggtgaccgtcagcgtggtccgggacgaagccggccagagcaccctg
ctggtcgcgcaagccactgaagaagctcccttcgccagcgaaagcgtggaaagccgcgaa
gacgccgagagcgccgtgcaaccggcaacggaagcggccgaagaagttgccgccccggtg
cccgtcgaagcagcagcccctagcgagcccgcaaccaccgaggagccgaccccggccatc
gcggcggtgccggccaacgcgaccggccgtgccctcaacgacccacgggaaaaacgtcgc
ctgcaacgcgaagccgagcgtctggcacgcgaagccgcagcagcagccgaagcggcagct
caggccgctcccgccgtcgaggaggtcccggctgtagcgagcgaggaagcgtcggcccag
gaggaacctgctgcaccccaggctgaagaaatcgcccaggccgacgttccgtcccaggcg
gacgaagcccaggaagcggtacaggccgagcctgaagcttccggcgaagacgccaccgac
acggagcacgcgaaaaagaccgaggaaagcgaaacctcgcgcccgcatgcctga
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