Pseudomonas aeruginosa MTB-1: U769_09920
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Entry
U769_09920 CDS
T02951
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paem
Pseudomonas aeruginosa MTB-1
Pathway
paem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U769_09920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paem03400
]
U769_09920
Enzymes [BR:
paem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U769_09920
DNA repair and recombination proteins [BR:
paem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
U769_09920
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
DUF7267
ERCC3_RAD25_C
AroM
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AHB55222
LinkDB
All DBs
Position
complement(2128551..2132003)
Genome browser
AA seq
1150 aa
AA seq
DB search
MPVSVLRLPSLPASAGKQHWGNLPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQEL
RFFAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYQLPQLKHGVLVVPISTALHRLA
PTRFLLGSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSEL
PFRIDLFDDEIETLRTFDPETQRSIDKVESIRLLPAREFPLNKEAVTGFRGRFRERFDVD
YRRCPIYQDLASGLTPSGIEYYLPLFFEETATLFDYLPQDTQVFSLPGIEQAAEQFWNDV
RSRYEDRRVDPERPLLPPAEVFLPVEDCFARLKNWPRVVASQEDVEPGVGRERFPALPLP
NLAIEAKAAEPLAALRRFIEEFPGRVLFCAESPGRREVLLELLARLKLRPEEVDGWPAFL
ASQARLAISIAPLDEGLLLDQPALALVAESPLFGQRVMQRRRREKTRDGGDAVIKNLTEL
REGAPVVHIDHGVGRYLGLITLEVDNQQAEFLMLQYAEDAKLYVPVANLHLIARYTGADD
ALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFKDPQADYATFSAGF
PFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVP
TTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQED
VKFANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA
TPPARRLSVRTFVMEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELVPEAR
IGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEVNLRVPALIPEDYL
PDVHARLILYKRIANAPDEEGLRELQVEMIDRFGLLPDPAKNLMRLTLLKLQAEKLGILK
VDAGPQGGRIEFAADTQVDPLVLIKLIQGQPNRYKFEGATLFRFQVPMERPEERFNTLEA
LFERLTPQTT
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgtgtccgtactgcgtcttcccagcctgccggccagcgccggcaagcaacactgg
ggcaacctccccggtgccgcgctgagcctggctgtcgccgaggccgccagttccgccaag
cgcttcaccctgctgctgaccgccgacagccagaatgccgaacgcctggaacaggaactg
cggttcttcgcccccgacctgccggtactgcatttccccgattgggaaaccctgccctac
gacgtcttttcgccgcaccaggacatcatttcccagcgcatcgccgccctctaccaattg
ccgcagctcaagcacggcgtgctggtggtgccgatctccaccgccctgcaccgcctggcg
ccgacccgcttcctgctcggcagcagcctggtcctcgacgtcggccagaaactcgacgtc
gagcggatgcgcctgcgcctggaaggcgccggctaccgctgcgtcgacacggtctacgag
cacggcgagttcgccgtccgcggcgcactgatcgacctgttcccgatgggcagcgagttg
cccttccgtatcgacctgttcgacgacgagatcgagaccctgcgcaccttcgacccggag
acccagcgctccatcgacaaggtcgagtcgatccgcctgctgccggcacgcgaattcccc
ctgaacaaggaagcggtcaccggtttccgcggccgcttccgcgagcgcttcgacgtcgac
taccggcgctgcccgatctaccaggacctcgccagcggtttgacaccctcgggaatcgag
tactacctgccgctgttcttcgaggaaaccgcgaccctcttcgactacctgccgcaagac
acccaggtgttctccctgcccggcatcgaacaggccgccgagcagttctggaatgacgta
cgcagccgctacgaggaccgccgggtcgatccggaacggccattgctgccgccggcggaa
gtgttccttccggtggaagactgcttcgcccggctgaagaactggccacgggtggtcgcc
agccaggaggacgtcgagccgggcgtcgggcgcgagcgcttcccggccctgccgctgccg
aacctggcgatcgaagccaaggccgccgagccgctggccgcgctgcgccggttcatcgag
gagttccccggccgcgtactgttctgcgccgaatcgcccggacgccgggaagtcctgctg
gagctgctggcccgactgaagctgcgccccgaggaagtcgacggctggccggccttcctc
gccagccaggcacgcctggcgatcagcatcgcgccgctggacgagggcctgctgctggac
caaccggcactcgccctggtcgccgaaagcccgctgttcggccagcgcgtcatgcaacgc
cggcgccgggaaaagacccgcgacggcggcgacgcggtgatcaagaacctcaccgagctg
cgcgaaggcgcgccggtggtgcacatcgaccatggcgtcggccgctacctgggcctgatc
accctcgaggtggacaaccagcaggcggaattcctcatgctgcaatacgccgaggacgcc
aagctctacgtgccggtcgccaacctgcacctgatcgcccgctacaccggcgccgacgac
gccctggcgccgctgcaccggctcggctcggaaacctggcagaaggccaagcgcaaggcc
gccgaacaagttcgcgacgtcgccgccgaactgctcgacatctacgcccgccgcgccgcc
cgcgaaggcttcgcgttcaaggatccgcaggccgactacgcgaccttctcggccggcttc
ccgttcgaggagacgccggaccagcaaagcgccatcgaggcggtggtcgccgacatgctc
gcgcccaggcccatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaagtg
gcgatgcgcgcggcgttcgtcgccgtgcatagcggcaagcaggtggcggtgctggtgccc
accaccctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccg
gtgagcgtcgaggtgatgagccgcttcaagagcgccaaggaagtcgagaacgccgcgcgg
ctactggccgaaggcaagatcgacatcctcatcgggacccataagctgctccaggaagac
gtgaagttcgccaacctggggttggtcgtgatcgacgaggaacaccgcttcggggtgcgc
cagaaggagcagctcaaggccctgcgcagcgaagtggatatcctcaccctcaccgccacg
ccgatcccgcggaccctgaacatggccgtctccggcatgcgcgacctgtccatcatcgcc
acgccgccggcgcgccgcctgtcggtgcgcaccttcgtcatggagcagcagaacgcggtg
atcaaggaagcgctgctccgcgaactgctgcgcggcggccaggtgtactacctgcacaac
gaagtgaagaccatcgagaagtgcgcccgcgacctcgccgaactggtcccggaggcgcgc
atcggcatcggccacggacagatgcacgagcgcgagctggaacaggtgatgagcgacttc
taccacaagcgcttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtg
cccagcgccaacaccatcctcatcgagcgcgccgacaagttcggcctggcccagttgcac
cagttgcgcggccgcgtcggtcgcagccaccaccaggcctacgcctacctgctgacaccg
ccgcgccgacagatgaccccggacgccgagaaacgcctggaagccatcgccaacgcccag
gacctgggcgccggcttcgtcctcgccacccacgacctggagatccgcggagccggcgag
ttgctcggcgacggccagagcgggcagatccaggcggtcggcttcaccctctacatggaa
atgctcgaacgggcggtgaaggccatccgcaagggcgagcaaccgaacctcgagcagccg
ctgggcggcgggccggaggtcaacctgcgggtgcctgcgctgatccccgaggattacctg
cccgacgtgcatgcccggctgatcctctacaagcgcatcgccaacgcccctgacgaggaa
ggtttgcgcgagttgcaggtggagatgatcgaccgcttcgggctcctgcccgatccggcg
aagaacctgatgcgcctgacccttctgaagctgcaggcggaaaaacttggaatcctcaag
gtcgatgccggaccgcagggcggtcgtatagaattcgccgccgatacccaggtcgacccg
ctggtactgatcaagctgatccagggccagccgaaccgctacaagttcgaaggcgcaacc
ctgttccgcttccaggtgcccatggaacgaccggaagaacgcttcaataccctggaggcg
ctgttcgagcgcctgacaccgcaaaccacctaa
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