Pseudomonas aeruginosa MTB-1: U769_10055
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Entry
U769_10055 CDS
T02951
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paem
Pseudomonas aeruginosa MTB-1
Pathway
paem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U769_10055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paem03019
]
U769_10055
03009 Ribosome biogenesis [BR:
paem03009
]
U769_10055
Enzymes [BR:
paem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
U769_10055
Messenger RNA biogenesis [BR:
paem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U769_10055
Ribosome biogenesis [BR:
paem03009
]
Prokaryotic type
rRNA processing factors
U769_10055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHB55249
LinkDB
All DBs
Position
complement(2156802..2159975)
Genome browser
AA seq
1057 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSTEELQW
DLDYLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALN
FIRQVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHF
EVQRLRDDSPELVAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEA
PVEPAKPMPEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNR
RRDGRDGNRRDEERKPREERAERQPREERAERPNREERSERRREERAERPAREERQPREG
REERAERTPREERQPREGREGREERSERRREERAERPAREERQPREGREERAERPAREER
QPREDRQARDAAALEAEALPNDESLEQDEQDDTDGERPRRRSRGQRRRSNRRERQREVSG
ELEGSEATDNAAAPLNTVAAAAAAGIAVASEAVEANVEQAPATTSEAASETTASDETNAP
TSEAVETQGADSEANAGETADIEAPVTVSVVRDEADQSTLLVAQVTEEAPFASESVESRE
DAESAVQPATEAAEEVAAPAPVEVAAPSEPAATEEPTPAIAAVPANATGRALNDPREKRR
LQREAERLAREAAAAAEAAAQAAPAVEEIPAVASEEASAQEEPAAPQAEEIAQADVPSQA
DEAQEAVQAEPEASGEDAADTEHAKKTEESETSRPHA
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcgactcaacccgaggagttgcgtgttgcactggtcgac
ggccaacgcctgttcgacctcgacatcgagtcgggcgcccgcgagcagaagaaggccaac
atctacaaaggccgcatcactcgcgtcgaacccagcctcgaagccgccttcgtcgacttc
ggcgccgaacgccacggcttcctccccctcaaagaaatctcccgcgaatacttcaagaaa
tcccccgaaggccggatcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgcggcaacaagggcgccgccctgaccaccttcatcagcctg
gccggccgttatctggtgctgatgccgaacaacccgcgcgccggcggcatctcccgccgt
atcgaaggcgaagaacgcaacgagctgcgcgaggccctgaacggcctcaacgcaccggcc
gacatgggcctgatcgtgcgcaccgccggcctcggccgcagcactgaggaactgcagtgg
gacctcgactacctgctgcaactgtggagcgcgatcaaggaagcgtccggcgaacgtggc
gcgcccttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgaac
ttcatccgccaggtgatgccgcagtacgccagcaaggtgaagctgtaccaggacagcgtt
ccgctgttcaatcgcttccagatcgagagccagatcgagaccgctttccagcgcgaagtg
aagctgccgtccggcggctccatcgtcatcgacccgaccgaggccctggtttccatcgac
atcaactcggcgcgcgccaccaagggcggcgacatcgaggaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagagcgtgtc
cgcgaagccctcgaggccgaccgcgcgcgcgtccaggtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgccagcgcctgcgtccgtccctcggcgagaccagcggcatcgtc
tgcccgcgctgcaacggccagggcatcatccgcgacgtcgagtcgctgtcgctggccatc
ctgcgcctgatcgaggaagaagccctgaaggaccgcaccgcggaagtccgcgcccgcgtg
cccttccaggtcgccgccttcctgctcaacgagaagcgcaacgccatcaccaagatcgaa
ctgcgtacccgcgcgcgcatcttcatcctgccggacgatcatctggaaaccccgcatttc
gaagtccagcgtctgcgcgatgacagccccgaactggttgccggccagaccagctacgaa
atggccaccgtcgagcacgaagaagcccagccggtcagctcgacccgcaccctggtccgc
caggaagcagcagtcaagaccgtcgctccccagcagcccgcaccgcaacacaccgaagca
ccggtcgagccggccaagccgatgcccgagccgagcctgttccagggcctggtgaagtcc
ctggtcggcctgttcgcaggcaaggatcaacctgccgccaagcctgctgaaaccagcaag
ccggctgccgagcgccaaacccgccaggacgagcgtcgcaacggccgccagcagaaccgc
cgccgcgatggccgcgatggcaatcgccgcgacgaagagcgcaaaccgcgcgaggagcgt
gcagaacgtcaaccgcgcgaagagcgcgccgaacgcccgaaccgcgaagagcgcagcgaa
cgccgccgcgaagagcgcgccgagcgtccggctcgcgaggagcgccagccgcgcgaaggc
cgtgaagagcgcgccgagcggacaccccgcgaagagcgccagccgcgcgaaggccgcgaa
ggtcgcgaggaacgcagcgaacgccgccgcgaagagcgcgccgaacgcccggcccgcgaa
gagcgccaaccccgcgaaggccgtgaagaacgcgccgagcgcccggcccgcgaagagcgc
cagccgcgcgaggatcgccaggctcgcgacgccgcggccctggaagccgaggcattgccg
aacgacgagagcctggagcaggacgagcaggacgataccgatggcgagcgcccgcgccgc
cgctcccgcggccagcgtcgtcgcagcaaccgccgcgaacgccagcgcgaggtcagcggc
gagctggaaggcagcgaggcgaccgataacgccgccgcgccgctgaacaccgtcgcagcc
gccgctgctgccggtatcgctgtcgccagcgaagccgtagaagcaaacgtggagcaagcc
ccggccactaccagcgaggctgccagcgaaaccacggcaagcgatgaaaccaacgcaccg
accagcgaagccgtcgaaacccagggcgcggacagcgaggccaatgccggcgaaaccgcc
gacatcgaagcgccggtgaccgtcagcgtggtccgggacgaagccgaccagagcaccctg
ctggtcgcgcaagtcactgaagaagctcccttcgccagcgaaagcgtggaaagccgcgaa
gacgccgagagcgccgtgcaaccggcaacggaagcggccgaagaagttgccgccccggcg
cccgtcgaggtagcagcccctagcgagcccgcagccaccgaggagccgaccccggccatc
gcggcggtgccggccaacgcgaccggccgtgccctcaacgacccacgggaaaaacgtcgc
ctgcaacgcgaagccgagcgtctggcacgcgaagccgcagcagcagccgaagcggcagct
caggccgctcccgccgtcgaggagatcccagctgtagcgagcgaggaagcgtcggcccag
gaggaacctgctgcaccccaggctgaagaaatcgcccaggccgacgttccgtctcaggcg
gacgaagcccaggaagcggtacaggccgagcctgaagcttccggcgaagacgccgccgac
acagagcacgcgaaaaagaccgaggaaagcgaaacctcgcgcccgcatgcctga
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