Pseudomonas aeruginosa MTB-1: U769_23255
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Entry
U769_23255 CDS
T02951
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
paem
Pseudomonas aeruginosa MTB-1
Pathway
paem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
U769_23255 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paem03400
]
U769_23255 (sbcB)
Enzymes [BR:
paem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
U769_23255 (sbcB)
DNA repair and recombination proteins [BR:
paem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
U769_23255 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
U769_23255 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U769_23255 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AHB57875
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All DBs
Position
complement(5008779..5010221)
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AA seq
480 aa
AA seq
DB search
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMAC
LITGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPY
AREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLEHGQAHDALS
DVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRC
PVVAPLSVLRGEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQ
LYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVDERQQ
WESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgaacgcgagtattttttggtacgactacgaaaccaccggcatcgacccccgc
cgcgaccggccgttgcagatcgccgggatccgcacggacgaggcgctgaacgagatcggc
gagccgatgaacctgtattgccgtcccagcgacgatatcctgccccaccctatggcttgc
ctgatcaccggcatcactccccagcggctggccgagcgggggctgtccgaggccgacttc
atgacccgggtacacgcccagctggcgcagccggcgacctgcgtggccggctacaactcc
ctgcgcttcgacgacgaagtgacgcgctacagcctgtaccgcaacttcttcgatccctac
gcccgcgagtggcaaggcggcaatagccgctgggacctgatcgacatggtccgtaccgcc
tatgccctgcgcccggagggcatccagtggccgcagctggacggccggctgtcgctgaag
ctggaaatgctcaccgcggcgaacggcctggagcatggccaggcccacgacgcgctttcc
gatgtccgcgccaccattgccctggcccgcctgatccgtcagcgccagccgcgcctgtac
gattacctctaccagttgcgtagcaagcacaaggtgctcgaccaggtgcgcctgctgcag
ccgctggtgcatgtctccggacgcttttccgcggagcgccatttcctctcggtggtcctg
ccgctggcctggcacccgcgcaaccgcaatgccctgatcgtctgcgacctctgcgccgat
cccgcgccgctgctggagttgtcggccgaggacttgcgcaggcgcctgtatacccgtcgc
gacgaactggccgagggtgagttgccggtgccgctgaagcagatccaggtcaaccgttgc
ccggtggtggcgccgctgtcggtattgcgcggcgaggatcgccagcgaaccggcatcgaa
ctcgaagagtgccagcgaaaagccgagttgttgcgccagcatcaaaccgtctgggcggac
aaactgacagcgctatatggcgaagaaagtttctccgccagcgacgaccccgagcaacag
ttgtatgacggatttattggcgatcgggatcgacgcctttgtgaacagctgcgccttgcc
gaaccggagcaattggccaaagaacaatggcccttcgacgatgcccgtttgcaggagttg
ttcttccgctatcgtgcgcgaaatttcccggaaactttaaatgtggacgagcgccaacaa
tgggaaagcttctgccgcaatcgtttgtcccatgaagaatacggcgcaccgaatactttg
ccggccttcgaggcggcgctggaggcttgtcggcaagagcagggcggcacattgccggcg
gtacttgcggcctggcgcgattacgccgcggaactgcgtcaacgctattcgctggagact
tga
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