Pseudomonas aeruginosa MTB-1: U769_25105
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Entry
U769_25105 CDS
T02951
Name
(GenBank) RTCB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
paem
Pseudomonas aeruginosa MTB-1
Brite
KEGG Orthology (KO) [BR:
paem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paem03016
]
U769_25105
Enzymes [BR:
paem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
U769_25105
Transfer RNA biogenesis [BR:
paem03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
U769_25105
Prokaryotic type
tRNA splicing ligases
U769_25105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AHB58249
LinkDB
All DBs
Position
5386684..5387898
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AA seq
404 aa
AA seq
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MKDMNILEVAGGKPIKLWTQGVPVEEEARQQLLNTAKMPFIFKHLAVMPDVHLGKGSTIG
SVIPTLGAIIPAAVGVDIGCGMIAARTSLVAADLPDNLHGLRSAIEQAVPHGKTFGRRDR
GAWHEVPEAADQAWKALAGRFKAITDKHPRLEKTNNRQHLGTLGTGNHFIEVCLDEADRV
WFMLHSGSRGVGNAIGNLFIELAKADMRQHIANLPDKDLAYFEEGSRHFDDYVEAVGWAQ
DFARQNRALMMHAVIEAARQVIRKPFEANLEAVDCHHNYVQKERHFGQEVLVTRKGAVSA
QKGQLGIIPGSMGAKSFIVRGLGNQEAFCSCSHGAGRTMSRTKAKKVFSVADQARATAHV
ECRKDADVIDEIPMAYKDIDRVMEAQRELVEVLHTLRQVVCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacatgaatatcctcgaagtggccggcggcaagccgatcaagctctggacccag
ggcgtaccggtggaggaggaagcgcgccagcagttgctgaacacggcgaagatgcccttc
atcttcaagcacctggcggtgatgcctgacgtgcacctgggcaagggctcgaccatcggt
agcgtgatccctaccctcggcgcgatcatcccggccgcggtgggcgtggatatcggctgc
ggaatgatcgccgcgcgcacctcgctggtcgccgccgacctgccggacaacctgcacggc
ctgcgcagcgccatcgagcaggcggtaccccacggcaagaccttcggccgccgcgaccgc
ggcgcctggcacgaggtaccggaggccgccgaccaggcctggaaggcgctcgccggtcgc
ttcaaggcgatcaccgacaagcacccgaggctggagaagaccaacaaccgccagcacctg
ggaaccctcggcaccggcaaccacttcatcgaggtctgcctggacgaggccgaccgcgtc
tggttcatgctgcacagcggttcgcgcggggtcggcaacgccatcggcaacctgttcatc
gaactggccaaggcggacatgcgccagcacatcgccaacctgccggacaaggacctggcc
tacttcgaggaaggcagccggcacttcgacgactacgtggaagcggtcggctgggcccag
gatttcgcccggcagaaccgcgcgctgatgatgcacgcggtgatcgaggcggcgcgccag
gtgatccgcaagccgttcgaagccaacctggaggcggtcgattgccaccataactacgtg
cagaaggagcgccacttcggccaggaggtactggtcacccgcaaaggcgcggtgtccgcg
cagaagggccagctcggcatcattcccggctcgatgggggcgaagagcttcattgtccgc
ggcctcggcaaccaggaagcgttctgctcgtgcagccacggcgccgggcggaccatgagc
cggaccaaggcgaagaaggtcttcagcgtcgccgaccaggcccgcgccaccgcccacgtc
gaatgccgcaaggacgccgacgtgatcgacgagatcccgatggcctacaaggacatcgac
cgggtcatggaagcccagcgcgagctggtggaagtgctgcacaccctgcgtcaggtggtg
tgcgtgaaaggatga
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