Paenibacillus sp. FSL P4-0081: P40081_00605
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Entry
P40081_00605 CDS
T03332
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
paen
Paenibacillus sp. FSL P4-0081
Pathway
paen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P40081_00605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paen03021
]
P40081_00605
03019 Messenger RNA biogenesis [BR:
paen03019
]
P40081_00605
Transcription machinery [BR:
paen03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
P40081_00605
Messenger RNA biogenesis [BR:
paen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
P40081_00605
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
AAA
AAA_22
OB_RNB
S1CSD-TOTE-2
Spore_III_AA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AIQ26885
LinkDB
All DBs
Position
125020..126378
Genome browser
AA seq
452 aa
AA seq
DB search
MDLQISDLEEMKLTDLYKLAKKYQIPYYGTLKKRELIFAILRAQAEQSGLMFMEGVLEIL
PEGYGFLRPINYLPSAEDIYISASQIRKFDLRSGDLVSGKCRTPKENERYFGLLQVNAVN
GENPASAAERLHFPALTPLYPQDKLPLETSSAHLSTRIMDLLAPVGLGQRGLIVAPPKAG
KTLLLKEIANSISTNNPEIALFVLLIDERPEEVTDMQRSVKGEVVASTFDELPENHIKVA
ELVLQRALRLVEHKKDVVILLDSITRLARAYNLVVPPSGRTLSGGIDPAAFHRPKRFFGS
ARNVEEGGSLTILATALIDTGSRMDDIIYEEFKGTGNMELHLDRKLAERRIFPAIDIRRS
GTRREEVLLSKEELDTIWSIRKNMNESYDFVEGFLKKLRDTKTNAEFLASFDVAGNKDSS
SANSTASKGGTSNSGSSARRTTRPKTPSVPTT
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcaaatttccgatctggaagaaatgaagctgaccgatctgtataagctggct
aagaaataccagatcccttattacggaacgctcaagaagcgggagctgatcttcgcgatt
ctccgggcgcaggctgagcagagcggtcttatgtttatggaaggcgtgcttgagatcctg
ccggaaggctacggtttccttagaccgattaactacttgccgagtgcggaggatatttat
atctcggcttcgcagatccgcaagtttgatcttagaagcggcgaccttgtatccgggaaa
tgccgtacacccaaagagaatgaacgttatttcggattgcttcaagtcaatgccgtcaat
ggtgagaatccggccagtgcagctgaacgattacatttcccggctcttacacctctttat
ccgcaagacaagctgccgcttgaaacttcctctgcccatttatctacccgtataatggat
ttgcttgctcctgtaggtttaggacagcgcggtttgattgtagcacctcccaaagcagga
aagacgctcctcctaaaagaaattgccaacagtatctccactaacaatcctgagatcgca
ttgtttgtactgctgattgatgaacgtcccgaggaagtaacggatatgcagcgttctgtt
aagggcgaggtagtagcttcaacgttcgacgagcttccggagaaccatatcaaagtggct
gagcttgtgcttcaacgggcactgcgtctggtcgagcacaagaaagatgtcgttattctg
ctggacagtattacccggctggcccgtgcttacaatctcgtagttccgccatccggccgg
acactgagcggagggattgatcctgcggccttccatcgtcctaagcgtttcttcggttcc
gcgcggaacgtagaagaaggcggaagcctgaccatacttgcaacagcgctgattgatacc
ggatcacgcatggacgatattatttacgaagaattcaaaggcacagggaacatggagctt
cacctggaccgcaagctggcagaacgccgtatcttcccggccatcgatatccgccgttcg
ggtacacgccgcgaggaagtattgcttagcaaggaagaactggataccatctggtcaatc
cgtaaaaatatgaatgaatcctacgactttgtagaaggattcctgaagaaactgcgtgac
accaagacgaatgctgagttcctggcctcttttgatgtggcgggcaacaaggattcttcg
tcagcaaacagtaccgccagcaaaggcggaacatcgaacagcggctcatcggcccgccga
accacgcggcccaagacaccttctgtacctacaacctga
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