Paenibacillus sp. FSL P4-0081: P40081_07695
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Entry
P40081_07695 CDS
T03332
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
paen
Paenibacillus sp. FSL P4-0081
Pathway
paen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P40081_07695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paen03019
]
P40081_07695
03400 DNA repair and recombination proteins [BR:
paen03400
]
P40081_07695
Enzymes [BR:
paen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P40081_07695
Messenger RNA biogenesis [BR:
paen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P40081_07695
DNA repair and recombination proteins [BR:
paen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
P40081_07695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AIQ28077
LinkDB
All DBs
Position
1703739..1705565
Genome browser
AA seq
608 aa
AA seq
DB search
MKMQGSLMEQAQAELQKYYGYPDFREGQKKIVNNLLEGRDTLGILPTGGGKSICYQVPAL
LLPGLTLVVSPLISLMKDQVDALTTAGIPAAYINSTLSGKEVNDRIRAARRGELKLLYVA
PERLELDWFRLEMAGLSISCVAVDEAHCVSQWGHDFRTSYLAVSPFVEELPQRPILAAFT
ATATPEVMEDMVRLLRLRDPGVFMTGLGRDNLAMQVLRGENKREFVLDYTAQHSHQPGIV
YAATRKEVDDLYQRLQATGVAAGRYHAGMSDQERAESQEGFLYDDIRVMVATNAFGMGID
KSNVRYVIHYNMPKNMEAYVQEAGRAGRDGEPSDCILLFSAQDIMTQKFLIEQNPQDTER
KANEYRKLQQMIDYCYTTRCLRSAQLDYFGENHDDDPCGICSSCTDERQLVDMTVDAQKI
FSCIHRMRERYGVALVSSVLKGSRNQKVLQYGFEKLPTHGAMSGRSEKEITESINVLISE
GYLALSEGQYPVVRLQPLAAEVLRGQREVHQRVARTLVTSGTRDRSRTRDHSPSAVNETV
FEQLRLIRRELAGREHVPSYIIFNDATLREMSVVCPQTEAEMLRVKGVGEVKYRKYGKAF
LEFFQNEM
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgcaaggatcactaatggagcaagcgcaggctgaactgcaaaaatattacggg
tatcccgatttccgggaaggccagaagaaaattgtgaacaatctgctcgaaggccgcgat
acgctgggcatcctgcctaccggaggcggtaaatcgatctgctatcaggttccggcactg
ctgctgccgggacttacacttgttgtatccccgctgatctcgctgatgaaggatcaggtg
gacgcccttactactgccgggattccggctgcctatatcaacagcaccttaagcggcaag
gaagtgaatgaccggatccgcgccgcccgccggggcgagctgaagctgctctatgtggcg
ccggaacgtctggagctggactggttccgcctggagatggcagggctgtcgatctcctgc
gtggctgtcgatgaagcgcactgcgtatcgcagtggggccatgatttccgtaccagctat
ctggcggtgtcgccgtttgtagaggagctgccgcagcggccgattctggctgcttttacc
gctaccgctacacctgaggttatggaggatatggtccggctgctgcgtctgcgcgatccg
ggcgtcttcatgacaggacttggccgtgataatctggccatgcaagtgctgcgcggagag
aataagcgtgaattcgtactggactacacggcgcagcattcgcatcagccgggtatcgtc
tatgccgccacccgcaaagaggtggatgatctctatcagcggctgcaggcgacgggagtc
gccgccggccgctaccatgccgggatgagcgaccaggaacgggccgagagccaggaaggg
ttcctgtatgacgatatccgcgtcatggttgccacgaatgcttttgggatggggatcgac
aaatctaacgttcgttatgtcattcactacaatatgccgaagaatatggaggcttatgtc
caggaggccggacgtgccggccgcgacggggagccgagtgactgtattctgctcttcagt
gcgcaggatattatgacgcagaagttcctgattgagcagaatccgcaggacacagagcgc
aaagccaacgaataccgcaagctgcagcagatgattgattactgctacaccacccgttgc
ctgcgcagtgcacagctggattatttcggcgagaatcatgacgatgatccgtgcggcatc
tgcagctcctgcaccgatgaacggcagctggtagacatgacggtggatgcgcagaagatc
ttctcctgcatccaccgcatgcgtgaacgctacggggtggcgctggtatcctcagtgctg
aagggctcacgcaatcagaaggtgctgcagtacggcttcgagaagctgccgacccacggg
gcgatgtccggccgcagcgagaaggaaattaccgagagcatcaatgtgctgatctcggag
ggttatctggccttgtccgaaggccagtatccggtcgtgcggctgcagccgctggcagcc
gaggtgctgcgcggccagcgtgaggtccaccagcgcgtggcccgcacgcttgtcacctcc
ggcacgcgggaccgcagccgtacgcgcgaccattcgccgtcggccgtcaacgagacggtc
ttcgagcagctgcgcctgatccgccgcgagctggcggggcgcgagcatgtgccgtcctac
atcattttcaatgatgcgacgctgcgcgagatgagcgtggtttgcccgcagacggaagcg
gagatgctgagggtgaagggtgtcggcgaagtgaagtaccgtaaatacggcaaggcattc
ctggagttttttcaaaatgaaatgtaa
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