Paenibacillus sp. FSL P4-0081: P40081_16220
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Entry
P40081_16220 CDS
T03332
Name
(GenBank) helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
paen
Paenibacillus sp. FSL P4-0081
Pathway
paen03420
Nucleotide excision repair
paen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P40081_16220
03430 Mismatch repair
P40081_16220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paen03400
]
P40081_16220
Enzymes [BR:
paen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P40081_16220
DNA repair and recombination proteins [BR:
paen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P40081_16220
MMR (mismatch excision repair)
Other MMR factors
P40081_16220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
UvrD_C
AAA_19
PhoH
AAA_30
SLFN-g3_helicase
AAA_16
DEAD
nSTAND3
NACHT
Motif
Other DBs
NCBI-ProteinID:
AIQ29524
LinkDB
All DBs
Position
3652803..3655160
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AA seq
785 aa
AA seq
DB search
MDKHDHEWQEEQERVTGITRQLSTHIRLLSEELGLHRTDVVDMRKDFWEEVTVNFSSPDD
LGETSTSLRQQAQILNERERHHLQSSKALKKYKKLVVSPYFGRIDFSESADAAADKIYLG
IGSLMEDNGTFLIYDWRAPISSLYYDGAPGPASYDTPGGLITGNMELKRQFVIDNGEIEV
MFDTGVTIGDELLQQVLSHSADDRMKSIVATIQKEQNAVIRNDRSRMLVVQGAAGSGKTS
AALQRVAYLLYKYREVLQADQMLLFSPNPLFNSYVSTVLPELGEENMQQTTFQMYLEHRL
GQEFQLEDVFNQTESLLNAPDGPEASIRRAGITYKSSVSFLDVIRRYVNLLEHEGMMFKP
LMFQGRAVVGKEEMERQFYSYDPGIKLANRIELMTGWLLKRIAAFSIEERSASWVDDQIE
LMDNSDYQRAYNMMRRKGGGHNDSFDDFETEKIMLARYIVSQRLKPLRGWTKRGRFVDVK
GLYSRLFTDRELMDSLNSSQVLPDVWDDICSFTLATIAGNELAYEDATPFLYLKELSQGF
RTNTLIRHVIVDEVQDYSPFQLEFMRRLFPRAKMTVLGDLNQAIYAQGEVLGDLAGLVSI
YGEENTEVISLTRSYRSTYEIVEFTRAMIPGGEKIVPFNRRGEEPLLTVVDSEDDLLASV
EQDVLSLHAQGYHYVAVICKTAEESARVHNELQSRLPVRLVTKETPNFQKGTLVLPAYLA
KGVEFDAVIIYDGSAEKYGREHERKLFYTACTRAMHLLHIYSLGQPNPFLPAAVRETVSA
GALQD
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
ttggataaacatgatcacgagtggcaagaggagcaggagcgggtaaccggaattaccagg
cagttatctacccacatccggctgctgtcggaggagcttggactccaccgtacggatgtc
gtggatatgcgtaaggacttctgggaagaagttaccgtgaacttcagcagtcctgacgat
ctgggcgagacctcaacaagcctgcggcagcaggcgcagatcctgaacgaacgcgaacgc
catcatctgcagtccagtaaagcactcaaaaaatataaaaagctggtcgtatccccctac
tttggccggattgatttctcggaatcagctgatgctgcggcagataaaatctatctgggc
atcggttcactgatggaggataacggaaccttcctgatctacgactggcgggccccgata
tcgagcctgtattatgacggtgcgccgggtccggcgtcctatgacacgccgggcggacta
attacggggaacatggagctcaaacgccagtttgtaatcgataatggagagatcgaagtg
atgttcgataccggcgtaacgatcggcgatgagctgcttcagcaggtgctgagccacagc
gccgatgaccggatgaagagcattgttgcgaccatccagaaggagcagaatgcggtgatc
cgcaacgacagaagccggatgctggttgtgcagggtgcggccggaagcggcaagacctca
gcggcgctgcagcgggtagcttacctgctctacaaataccgcgaggtattgcaggcagac
cagatgctgctcttttcaccgaacccgctgtttaacagctatgtatcaaccgttctgcct
gaactcggtgaagagaatatgcagcagaccaccttccagatgtatctggagcaccggctc
ggacaagagtttcagctggaggatgtgttcaatcagacggagagcctgctgaacgcgccg
gatgggccggaagcctccatacgcagagcagggatcacctataaatcctccgtatcgttc
ctggatgtcatccggcggtatgtaaacctgctggagcacgaaggcatgatgttcaagccg
ctgatgttccaggggcgtgcggttgtcggcaaggaagagatggagcgccagttctatagc
tatgacccgggtatcaagctggctaaccggatcgaactgatgaccggctggctgctcaaa
agaatagcagcatttagcattgaggaacgcagtgcatcatgggtcgatgaccagattgag
cttatggacaacagcgactatcagcgtgcttataatatgatgcgccgcaagggcggaggg
cataatgatagctttgatgattttgaaacggagaaaatcatgctcgcccgttatatcgtc
agccagcgcctcaagccgctgcgcggctggaccaaacgcggacggttcgttgatgtgaag
gggctgtacagccggctgtttaccgaccgggagttaatggacagcctgaacagcagccag
gttctgcctgatgtatgggatgacatctgcagcttcacgctggctaccattgccgggaac
gaactggcctacgaagacgcgacaccatttctgtatttgaaggagctcagtcagggcttc
cgcaccaatacactgatccgtcatgtgatcgtcgatgaagtgcaggattattcgccgttc
cagctggaattcatgcgccggctctttccgcgggccaaaatgactgtgctgggcgatctc
aaccaggcaatctatgcgcaaggtgaggtgcttggggatttggccgggctggtcagcatc
tatggcgaagagaacacggaagtgatctcattgacccgcagctaccgctctacctatgag
attgtcgagtttacacgggcgatgattcccggaggggagaaaatcgtaccgtttaaccgg
cgcggcgaggagcctttgctgacagtcgtggacagtgaagacgacctgctggcctcggtg
gagcaggatgtgctgagtctgcatgcacagggctatcattatgtagctgttatctgcaaa
acagcggaagaaagtgcacgggtgcataatgaactgcagagcaggctgccggttaggctg
gttaccaaggaaacgcctaattttcaaaagggcactctggtgctgcccgcctatctggct
aaaggcgtggagttcgatgccgtaattatctacgatggctccgcagagaaatatggccgt
gagcatgaacgcaagcttttctataccgcctgtacccgggcgatgcatctgcttcatatc
tacagcctgggtcagcctaatccgttccttccggctgcggtgcgcgagactgtatcggca
ggagctttacaggactga
DBGET
integrated database retrieval system
