Pseudomonas aeruginosa PAO581: M801_3956
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Entry
M801_3956 CDS
T03171
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
paeo
Pseudomonas aeruginosa PAO581
Brite
KEGG Orthology (KO) [BR:
paeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeo03019
]
M801_3956 (hrpB)
Enzymes [BR:
paeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
M801_3956 (hrpB)
Messenger RNA biogenesis [BR:
paeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M801_3956 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
HA2_N
AAA_30
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGV60647
LinkDB
All DBs
Position
complement(4219378..4221894)
Genome browser
AA seq
838 aa
AA seq
DB search
MISLPIDAVVPALRQALGAQHQAVLEAPPGAGKTTRVPLALLDEPWLAGQRILMLEPRRL
AARAAAERLAAELGEKVGETVGYRIRLESRVGPKTRIEVVTEGILARRLQDDPALDGVGL
VIFDEFHERSLDADLALALTLNGRELLRDEPPLKVLVMSATLEGERLAALLGEAPVVRSE
GRMFPVDIRWGRPAQPGEFIEPRVQQAVLQALAEESGSVLVFLPGQAEIRRVHEGLREAL
GGRPEVLLCPLHGELDLAAQRAAIEPASRGTRKVVLATNIAETSLTIDGVRVVIDAGLAR
VPRFDPGSGMTRLETQRISRASATQRAGRAGRLEPGVCYRLWSESQHEQLPAYGTAEILQ
ADLAGLALQLARWGVAPEELAWLDAPPAAAYAQARELLGRLGALNASGALSAHGQAMAEL
PTHPRIAHLLLRGQALGLGELACDVAALLGERDIQRGGGADLHSRLALLAGEARTGASRG
AVQRARQLARQFRGYLRGAASEAVVDPGHPRWLGCLLAFAYPDRIARQRRAGGGDYRLAN
GRAAQFGEPDSLMKQPWLVIADLGSRQGQREERIYLAAELDPRLFDTVLAEQVSQRDELQ
WDEREGVLRAERQRRVGELVLSSEALPGLDEAARSQALLGLVRRKGLELLPWTPELRQWQ
ARIGLLRRLDLEDKGESEWPDVSDAALLERLEEWLPAYLGKVTRLAHFANLDLASILAGL
LPWPLPQRLDEWAPKTLEVPSGSRIRLDYSETPPILAVRLQELFGLGDTPRIAQGRLAVK
LHLLSPAHRPVQVTQDLANFWRSTYAEVRKDLKGRYPKHYWPDDPLVAEATARAKPRK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgatttccctacccatcgacgccgttgttcccgccctgcgccaggcccttggtgcacaa
caccaggccgtcctggaagccccgccgggtgccggcaagaccacccgggtgccgctggcc
ctgctcgacgagccctggctcgccggccaacgcatcctcatgctcgaaccgcgacgcctg
gcggcgcgggccgcggccgagcggctggccgccgagctgggcgaaaaggtcggcgagacc
gtcggctaccggatccgcctggagagcagggtcggcccgaagacccgcatcgaagtggtc
accgagggtatccttgcccgtcgcctgcaagacgaccccgcgctggacggtgtcggcctg
gtgatcttcgacgaattccacgagcgcagcctggatgccgacctagccctggcgctgact
ctcaatggccgcgaactgttgcgcgacgagccgccgctgaaagtgctggtgatgtcggcg
accctggagggcgagcgtcttgcggcgctgctcggcgaagcgccggtggtgcgcagcgag
ggccgcatgttcccggtggatatccgctggggacggccggcgcaacccggcgagttcatc
gagccgcgggtgcagcaggcggtgctccaggcgctggcggaggaaagcggcagcgtgctg
gtctttcttcccggccaggccgagatccgccgcgttcacgaaggcttgcgcgaagccctt
ggcggacgccccgaggtgctgctctgcccgctgcatggcgagctcgacctcgccgcccag
cgcgccgccatcgagccggcgtcgcggggcacgcgcaaggtggtgctggcgaccaacatc
gccgagaccagcctgaccatcgacggcgtacgggtggtgatcgacgccggcctggcgcgg
gtgccgcgcttcgatccgggtagcggcatgacccgcctggagacccagcgcatctcccgc
gcctccgctacccagcgtgccggccgcgcagggcgcctggagccgggcgtatgctaccgc
ttgtggtcggagagccagcatgagcagttgcctgcctacggcacggcggaaatcctccag
gccgatctggccgggctggccctgcaactggcgcgctggggcgtggcgccggaggagctg
gcctggctcgacgcgccgcccgcggcggcctacgcccaggcccgcgagctgctcgggcgg
ctgggggcgctgaacgccagcggcgcgttgagtgcccatggccaggcgatggccgaattg
ccgacccatccgcgcattgcccacctgctgctgcgcggccaggccctcggccttggcgaa
ctggcttgcgacgtagcggcgctgctcggcgaacgtgacatacagcgtggcggcggtgcc
gacctgcacagccgtctcgccctgctcgccggcgaggcccgcactggcgcctcgcgcggc
gcggtacagcgcgcccggcaactggcccggcagttccgcggttacctgcgcggcgccgcc
agcgaggcggtcgtcgatcccggtcatccgcgttggctgggttgcctgctggccttcgcc
tatcccgaccgcatcgctcgccagcgccgcgccggtggcggcgactaccggctggccaat
ggacgcgctgcgcagttcggcgaaccggacagcctgatgaagcagccctggctggtgatc
gccgatctgggcagccgccagggccagcgcgaagagcggatctacctggccgccgaactc
gatccgaggttgttcgatacggtcctggcggagcaggtcagccagcgcgacgagctgcag
tgggacgagcgcgaaggcgtgctgcgtgccgagcgccagcgccgggtcggcgaactggtg
ctgtccagcgaggcgctacccggcctcgacgaagcggcgcgcagccaggcgctgctcggc
ctggtccggcgcaagggcctggagttgttgccctggaccccggaactgcgccagtggcag
gcgcgcatcggcttgctgcgccggctggacctggaagacaagggcgagagcgagtggccg
gacgtcagcgacgccgcgttgctggaacggttggaggaatggttgccggcctatctcggc
aaggtcacccgcctggctcacttcgccaacctcgacctggcttcgatcctcgccgggctg
ttgccctggccattaccgcagcgtctcgacgagtgggcgccgaaaaccctggaagtcccc
tccggctcgcgcatccgcctggactacagcgaaaccccgccgatcctcgcggtgcgcctg
caggaactgttcggcctcggcgacactccgcgcatcgcccagggccgcctggcagtgaag
ctgcacctgctgtctcccgcgcatcgcccggtgcaggtgacccaggacctggcgaacttc
tggcgcagcacctatgcggaagtcaggaaggacctgaagggacgctatccgaagcattat
tggccggacgacccgctggtggccgaggccactgcccgggccaagccacgcaagtag
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