Pseudomonas aeruginosa PA1: PA1S_08870
Help
Entry
PA1S_08870 CDS
T02928
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
paep
Pseudomonas aeruginosa PA1
Brite
KEGG Orthology (KO) [BR:
paep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paep03019
]
PA1S_08870
Enzymes [BR:
paep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PA1S_08870
Messenger RNA biogenesis [BR:
paep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PA1S_08870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
NACHT
AAA_25
ABC_tran
T2SSE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AHA17089
LinkDB
All DBs
Position
1878869..1882849
Genome browser
AA seq
1326 aa
AA seq
DB search
MTDQTPSLDQLVRCLDQAQISDRHRLRRQLHELRKQPDDARLAQWVERFQASCAKVEARR
ASVPAIRYDDSLPIAAKRDEIKAAIAAHQVVVIAGETGSGKTTQLPKICLELGRGIHGLI
GHTQPRRLAARSVATRVAEEIGTPLGALVGYQVRFEDQSDDSTLVKLMTDGILLAETQHD
RYLERYDTLIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSRHFDGAP
VIEVSGRTYPVETWYRPLAAETDEEGNRVEDDLSVDQGILAALDEIAAHEREVGKRPGDV
LVFLPGEREIRDAAEMLRKANLRHTEVLPLYARLTPAEQQKIFQPRPGRKIVLSTNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYS
EEDFNARPAFTDPEILRTNLAAVILQMLHLRLGDIEAFPFIEPPDGKAIKDGFTLLQELS
AVNREGQLTPLGRQLARLPIDPRLGRMLLEAAQQGSLEEVLTVASALSVQDPRERPVERQ
QAADQAHAQWKDPDSDFAALINLWRGFEEQRQALGSNALRSWCRKNFLNYLRLREWRDAH
RQLTLICRELKLPFGRPAKAEARKPEAKKGASADNEREVPGIDYAAVHKAILSGLLSQIG
QKAEEGDYLGARQRRFWIHPSSGIARKRPQWIMAAELVETTKLFARMVAKIEPDWLEPLA
GHLIKTNHFEPHWEKRRGQVVAFEQVTLYGLIVIGRRPVHYGPIDPPVARELFIREGLVR
GEINSRAKCLSANRQLLEKLDELEAKARRRDILADEETLFAYYDARLPADIYQTASFEKW
YARERQNQPDLLLMREEDVLAREASEVTAAQYPDRLRLGDLHLSLSYQFEPGTARDGVTV
RVPAPLLPQLPAERIDWLVPGLLYDKAVALVRNLPKAIRKSFVPVPDFVRAALERITFGE
GSLPQVLGRELQRMTGVRVADEAWAEAATQLDDHLRMNIEVVDAQGKFLGEGRDLAELTA
RFAEASQAALAIPQADKEQQRPVEAKAFASVAEKAQQKVAGLSMTVYPALVEEQGEVKEG
RFPTQAEADYQHRRALQRLLLQQLAEPAKYLRAKLPGQTEMGLLYRELGRVEALVEDILL
ASLDSCVLQGESLPRDGAALAALAERKRAAWNEHAERLARLVLDILKLWHGLQKRFKGKV
ELAMTVPLNDVKGQLANLVYPGFVRATPLEWLKEYPRYLKAIEQRLDKVAGQVQRDRVWS
GELGELWAQYQARLAKHAQEGKRDAELQVYRWMLEEYRVSLFAQQLGTRLPVSDKRLAKQ
WSQVEG
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccagactccttcccttgaccaactcgtccggtgcctcgaccaggcccagatc
agcgaccgccaccgcttgcgccggcagctccacgaactgcgcaagcagcccgacgacgcg
cgcctggcgcagtgggtcgagcgcttccaggcctcctgcgccaaggtcgaggcgcggcgc
gccagcgtgccggcgatccgctacgacgacagcctgccgatcgccgccaagcgcgacgag
atcaaggccgccatcgccgcccaccaggtggtggtgatcgccggcgagaccggctcgggc
aagaccacccagttgccgaagatctgcctggagctggggcgcggcatccacggcctgatc
ggccatacccagccgcgtcggctggcggcgcgcagcgtggcgacgcgggtcgcggaagag
atcggcacgccgctgggcgcgctggtcggctaccaggtgcgcttcgaggaccagagcgac
gacagcaccctggtcaagctgatgaccgacggcatcctcctggccgagacccagcacgac
cgctacctggagcgctacgacacgctgatcgtcgacgaagcccacgagcgcagcctgaac
atcgacttcctcctcggctacctgaagaccctgttgcaccggcgtccggacctgaagctg
atcatcacctcggcgaccatcgacctggagcgtttctcccggcatttcgacggcgccccg
gtgatcgaggtttccggccgcacctatccggtggagacctggtaccggccgctggcggcg
gaaaccgacgaggagggcaaccgggtcgaggacgacctgtcggtggaccagggcatcctc
gccgccctcgacgagatcgccgcccacgaacgcgaggtcggcaagcggcccggcgacgtg
ctggtgttcctccccggcgagcgggagatccgcgacgccgcggagatgctgcgcaaggcc
aacctgcgccacaccgaggtgctgccgctgtacgcgcgactgaccccggccgagcagcag
aagatcttccagccgcgcccgggacgcaagatcgtgctgtccaccaacgtcgcggaaacc
tcgctgacggtgccgggcatccgttacgtgatcgacagcggcaccgcgcggatcagccgc
tacagctaccgcgccaaggtccagcggctgcccatcgaggcggtgtcgcaggccagcgcc
aaccagcgcaagggccgttgcggacgggtcgagccgggcatatgcgtgcgtctctacagc
gaggaggacttcaacgcgcgtccggccttcaccgacccggaaatcctccgcaccaacctg
gccgcggtgatcctgcagatgctgcacctgcgcctcggcgacatcgaggcgttccccttc
atcgagccgccggacggcaaggcgatcaaggacggcttcacccttctgcaggaactgtcg
gcggtcaaccgcgaaggccagctgaccccgctggggcgccaactggcgcgcctgccgatc
gacccgaggctgggccgcatgctgctggaggcggcccagcagggtagcctcgaggaagtg
ttgacggtggccagcgcgctgtccgtgcaggacccgcgcgagcgtccggtggagcggcag
caggccgccgaccaggcgcacgcgcaatggaaggacccggattccgacttcgccgcgctg
atcaatctctggcgtggcttcgaggagcagcgccaggcgctgggttccaatgccctgcgc
agctggtgccggaagaacttcctcaactacctgcgcctgcgtgagtggcgcgacgcccac
cgccaactgaccctgatctgccgcgaactgaagctgccgttcgggcgtccggccaaggcc
gaggcgcgcaagccggaggcgaagaaaggcgcgtcggccgacaacgaacgcgaggtaccg
gggatcgattacgcggcggtccacaaagcgatcctgtccggcctgctcagccagatcggg
cagaaggccgaggaaggcgactacctcggcgctcgccagcgacgtttctggatccatccg
tccagcggcatcgctcgcaagcgcccgcaatggatcatggccgcggaactggtggagacc
accaagctgttcgcccgaatggtcgcgaagatcgagccggactggctggagccgctggct
gggcacctgatcaagaccaaccacttcgagccgcactgggagaagcgtcgcggccaggtg
gtggcgttcgagcaggtcaccctctacggcctcatcgtcatcggtcgacgtccggtgcac
tacggtccgatcgacccgccggtggcgcgcgagctgttcatccgcgaaggcctggtgcgc
ggcgagatcaacagccgcgccaagtgcctgagcgccaaccggcagttgctggaaaagctc
gacgagctggaagccaaggcacgccggcgcgacatcctggccgacgaggaaaccctgttc
gcctattacgacgcgcgcctgccggcggatatctaccagaccgccagtttcgagaaatgg
tacgcccgcgagcggcagaaccagccggacctgctgctgatgcgcgaggaagacgtgctg
gcccgcgaagccagcgaagtcactgcggcgcagtacccggatcgcctgcgcctgggcgat
ctgcacctgtcgctgagctaccagttcgagcccggcaccgcgcgcgacggcgtcaccgtg
cgggtaccggcgccgctgctgccgcaattgccggccgaacgcatcgactggctggtgccc
ggcctgctctacgacaaggcggtggcgttggtgcgcaacctgccgaaggcgatccgcaag
agcttcgtgccggtaccggacttcgtccgcgccgccctggagcgcatcaccttcggcgaa
ggttcgctgccgcaggtgctgggccgcgagcttcagcgcatgaccggcgtgcgggtagcc
gacgaggcctgggccgaggcggcgacgcagttggacgatcacctgcggatgaacattgag
gtggtcgacgcccagggcaagttcctcggcgagggccgcgacctggccgaactcaccgcg
cgtttcgccgaagccagccaggcggcgctggcgataccccaggccgacaaggaacagcag
cgtccggtggaggccaaggccttcgccagcgtcgccgagaaggcccagcagaaggtcgcc
ggattgtcgatgacggtatacccggcgctggtggaggagcagggcgaggtcaaggaaggg
cgcttcccgacccaggccgaggccgactaccaacaccgccgcgccctgcaacgactgctg
ttgcagcaactggccgagccggccaagtacctgcgcgccaagctgccggggcagaccgag
atgggcctgctgtaccgcgagctgggacgggtcgaggcgctggtcgaggacatcctcctg
gccagtctcgacagttgcgtgctgcagggcgaaagcctgccgcgcgacggcgccgcgctg
gccgcgctggccgagcgcaagcgcgctgcctggaacgagcacgccgagcgcctggcacgc
ctggtgctggatatcctcaagctctggcacggcctgcagaagcgcttcaagggcaaggtc
gagctggccatgaccgtgccgctgaacgacgtcaagggccaactggccaacctggtgtat
ccggggttcgtccgcgccaccccgctggagtggttgaaggagtatccgcgttacctcaag
gccatcgagcagcgcctggacaaggtcgccggccaggtccagcgcgaccgggtgtggagc
ggcgagctgggcgaactctgggcgcaataccaggcgcgcctcgccaagcacgcccaggaa
ggcaagcgcgacgccgagttgcaggtgtatcgctggatgctggaggagtaccgggtctcg
ctgttcgcccagcaactgggaacccggctgccggtctcggacaagcgcctggccaagcag
tggagccaggtcgagggctag
DBGET
integrated database retrieval system
