Paenibacillus sp. FSL R5-0912: R50912_11935
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Entry
R50912_11935 CDS
T03334
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paeq
Paenibacillus sp. FSL R5-0912
Pathway
paeq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paeq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50912_11935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeq03019
]
R50912_11935
03009 Ribosome biogenesis [BR:
paeq03009
]
R50912_11935
Enzymes [BR:
paeq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R50912_11935
Messenger RNA biogenesis [BR:
paeq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R50912_11935
Ribosome biogenesis [BR:
paeq03009
]
Prokaryotic type
rRNA helicases
R50912_11935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
UvrD-helicase
AAA_30
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AIQ40651
UniProt:
A0A089JV25
LinkDB
All DBs
Position
2755001..2756452
Genome browser
AA seq
483 aa
AA seq
DB search
MSEVQVQFSDYGLNEEIIRALEVLKYVDPTEVQRKVIPVALKAQDLIVKSQTGSGKTAAF
AIPLCELVDWNENKPQALVLTPTRELAQQVREDITNIGRFKRIKAVALFGKQPFAPQKIE
LTQKTHVVVGTPGRVFDHIDRGTLNLSRIKYLVIDEADEMLSMGFIEQIEKIIKQLPKER
VTMLFSATLPEVIKNLCRKYMTEPVDIEIEASGITTASIEHALIEVRQAAKFGLLSDLLT
VESPDSCIIFCRTQEQVNALFRGMADLEYPVDKIHGGMEQDERFEVMNAFKRGQFRYLIA
TDVAARGIDIENITHVINYDIPLEKESYVHRTGRTARAGKSGKAITFVTPNEHKWVKEIE
GYIGFTLPEMKAPSDDAVAYAKPAFDLKLGKQQVRKAGKTEVMNQDIMKLYFNGGKKKKL
RAVDFVGTIAKLEGITAADIGIITIQDNVTYVDILNGKGSLVLQAMKETTVKGKLLKCHI
ANK
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagtacaagtacagtttagtgattatggtctaaatgaagagattatccgcgcg
ctggaggttctgaaatacgtagaccctactgaggtgcagcggaaggttattccggtagcg
ctgaaggcgcaggatctgatcgtaaagtcgcagacgggcagcggcaaaaccgcagccttc
gccattccgctctgtgagctggtggattggaatgagaacaaaccccaggcactggtgctg
acaccaacccgggaactggcccagcaggtgagagaagacattacgaacatcgggcgcttc
aagcggatcaaggcggtagcactgttcggcaagcagccgtttgccccgcagaagattgag
cttacccagaagacgcatgtggtcgttggcacgccgggccgtgtgttcgatcatattgac
cgtggaacgctgaatctcagccggattaaatatctggtgattgatgaagcggacgaaatg
ctcagcatgggcttcattgagcagattgagaagattatcaagcagctgcctaaggaacgt
gtaacgatgctgttctcggcgacgttgccggaagtaattaagaatctgtgccgtaagtac
atgacggagccggtggatatcgagatcgaagccagcggaattacgacggcgtcgatcgag
catgcgctgattgaagtgagacaagctgccaagtttggactgctgagcgacctgctgacg
gtggagagtccggatagctgtattattttttgccgcacccaggagcaggtgaatgccctc
ttccgcggaatggcggatctggaatatccggtggacaaaatccacggcggcatggagcag
gacgagcgttttgaggtcatgaatgcttttaagcggggccagttccgttatctgatcgcc
accgacgttgcagccagagggattgatatcgagaacatcacccatgtcattaactacgat
atcccgctggaaaaagagagctacgtccaccgcaccggccggaccgcccgcgcaggcaaa
agcggtaaagcaatcacctttgttacgccgaacgagcacaaatgggtcaaggaaatcgaa
ggttacatcggcttcaccctgccggagatgaaagctccttcggatgatgccgtggcctac
gccaaaccggccttcgatctgaagctgggcaagcagcaggtccgcaaagccggcaaaacc
gaggtcatgaaccaggacatcatgaagctctacttcaacggcggcaagaaaaagaagctc
cgcgcggtcgatttcgttggcaccatcgccaagcttgagggcatcacagcggcggacatc
gggatcatcacgatccaggacaacgtgacctacgtcgatattctgaacggcaagggatcg
cttgtgctgcaggcgatgaaggagacaaccgtgaagggcaagctgctgaagtgccatatc
gccaataaataa
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