Paenibacillus sp. FSL R5-0912: R50912_19590
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Entry
R50912_19590 CDS
T03334
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paeq
Paenibacillus sp. FSL R5-0912
Pathway
paeq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paeq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50912_19590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeq03019
]
R50912_19590
Enzymes [BR:
paeq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R50912_19590
Messenger RNA biogenesis [BR:
paeq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R50912_19590
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
SUa-2TM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIQ41997
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All DBs
Position
complement(4472679..4474247)
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AA seq
522 aa
AA seq
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MTFNDLNLIPPILKALSLENYTSPTPIQEESIPAALAGRDILGCAQTGTGKTAAFSLPII
QLLSQQPARTGGAKRIRSLILTPTRELALQISENIQAYSKFTTIRSTAIVGGVSQKAQER
ALSQGADILIATPGRLIDLISQRHVDLQHVQILVLDEADRMLDMGFIHDVKRIIAKMPAK
KQTLFFSATMPAEISQLVKTLLVDPVKIEITPVSSTVDRIEQSIYLLENGNKQNQLNRLL
QDPSIVSALVFTRTKRGADRVTRDLTRINITAQAIHGNKSQNDRQNALRNFKSGATRVLV
ATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGVAISLCEAEEIPYLKDI
QKLIGKVIPEVKDHAYPMSKSNLALLADRPGKAPAKPSQKAKTNPARKPKSEWFTQGKQG
AGNGGAKSASGSGYAGNGAKSASGSSYAGSGAGSSRPAGESGNRAGSGSRPGEKSASRPG
GGSNNKPGGGQFNRSSQSGSRPGSSQNVRPSSRPAAKAGRSQ
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaacgatttgaacttgattcccccgattctcaaggcactgagcctggaaaac
tatacatccccgactccaattcaggaggaatccatccctgcggccttggccggcagagat
attctgggctgcgcccagacgggtaccggaaaaaccgcagctttttcattgccgattatt
cagctgctcagccagcagccggccagaaccggcggagcgaaacgtatccgttccctgatt
ctgaccccgaccagagagctagctctgcagatctccgagaatattcaggcgtacagcaag
ttcacaacgatccgctcgacagcgattgtcggaggggtatcccagaaggcccaggaacgg
gcgcttagccagggtgcagatattctgattgctacaccgggcagattgatcgatctgatc
agccagagacatgtggatctgcagcatgtgcagattctcgtgctggatgaagcggaccgc
atgctggacatgggcttcattcatgacgtgaagcggattattgccaaaatgccggccaag
aagcaaacgctgttcttctcggcaacgatgccggcggagatctcacagctggtgaagaca
ttgctagtggacccggtgaaaattgagattactccggtatcttcgaccgtagacagaatt
gagcaatcgatttatttgctggagaatggtaataagcagaatcagctgaaccgtttgctg
caggatccttcgatcgtgtcagcgctcgtcttcacccgcaccaagcgcggagctgaccgg
gtaacccgcgatttgacccgaattaatattaccgcccaggctattcacggcaacaaatcg
cagaatgaccgccagaatgcgctgagaaacttcaagagcggcgcgacacgtgtgctggta
gctacagatatcgccgcccgcgggattgatattgatgagctatcccatgtcatcaacttc
aacctgccgaatattccggaaacctacgttcaccgtattggccggaccggccgtgcggga
atgagcggagttgccatctcgctgtgcgaagctgaggaaattccatacctgaaggatatc
cagaagctgatcggcaaggtgattccggaagtgaaggatcatgcttatccgatgtccaag
agcaatctggcattgctggcagaccgtccaggcaaagcaccggccaaaccgtcgcagaaa
gctaaaacgaatccggcacgcaagccgaaatcggaatggttcacgcaaggcaagcaaggc
gccggtaacggcggagcgaaaagcgcgtcgggcagtggctatgcaggcaacggagcgaaa
agcgcatcgggcagtagctatgcgggcagcggggctggcagcagccggcctgctggcgag
tccggcaacagagcaggctccggcagcaggccgggcgaaaaatctgcgtcccgtccaggg
ggcggttcaaacaataaaccgggtggtggacagtttaaccggtccagccaatctggcagc
agacccggcagcagccagaacgtacgccccagcagccgtcctgcggccaaagcaggcaga
tctcaataa
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